RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 ATG4AQ8WYN0 398 aa17.91■□□□□ 0.46
SHANK1-201ENST00000293441 VPS33BQ9H267 617 aa17.91■□□□□ 0.46
SHANK1-201ENST00000293441 RUVBL2Q9Y230 463 aaKnown RBP17.91■□□□□ 0.46
SHANK1-201ENST00000293441 IL1R1P14778 569 aa17.91■□□□□ 0.46
SHANK1-201ENST00000293441 SFSWAPQ12872 951 aaKnown RBP17.91■□□□□ 0.46
SHANK1-201ENST00000293441 CATSPER1Q8NEC5 780 aa17.91■□□□□ 0.46
SHANK1-201ENST00000293441 THTPAQ9BU02 230 aa17.91■□□□□ 0.46
SHANK1-201ENST00000293441 NRXN1Q9ULB1 1477 aa17.91■□□□□ 0.46
SHANK1-201ENST00000293441 KRT87PA6NCN2 255 aa17.91■□□□□ 0.46
SHANK1-201ENST00000293441 TBC1D4O60343 1298 aa17.91■□□□□ 0.46
SHANK1-201ENST00000293441 RAG1P15918 1043 aa17.91■□□□□ 0.46
SHANK1-201ENST00000293441 RFX3P48380 749 aa17.91■□□□□ 0.46
SHANK1-201ENST00000293441 SLC47A2Q86VL8 602 aa17.91■□□□□ 0.46
SHANK1-201ENST00000293441 SLC13A5Q86YT5 568 aaPredicted RBP17.91■□□□□ 0.46
SHANK1-201ENST00000293441 OSBPL1AQ9BXW6 950 aa17.91■□□□□ 0.46
SHANK1-201ENST00000293441 MANSC1Q9H8J5 431 aa17.91■□□□□ 0.46
SHANK1-201ENST00000293441 MANSC4A6NHS7 340 aaPredicted RBP17.9■□□□□ 0.46
SHANK1-201ENST00000293441 CD44P16070 742 aaKnown RBP17.9■□□□□ 0.46
SHANK1-201ENST00000293441 ADORA2AP29274 412 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 MMP14P50281 582 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 TFDP3Q5H9I0 405 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 FAM131BQ86XD5 332 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 ZFP42Q96MM3 310 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 PRPF39Q86UA1 669 aaKnown RBP17.9■□□□□ 0.46
SHANK1-201ENST00000293441 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.9■□□□□ 0.46
SHANK1-201ENST00000293441 E2F7Q96AV8 911 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 SGSM3Q96HU1 749 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 CISHQ9NSE2 258 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 GID8Q9NWU2 228 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 USP15Q9Y4E8 981 aaPredicted RBP17.9■□□□□ 0.46
SHANK1-201ENST00000293441 MAP3K13O43283 966 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 PPP1R37O75864 691 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 MFSD10Q14728 455 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 AGAP9Q5VTM2 703 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 UNC45BQ8IWX7 931 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 JADE3Q92613 823 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 PRPF18Q99633 342 aaKnown RBP17.9■□□□□ 0.46
SHANK1-201ENST00000293441 ZSWIM1Q9BR11 485 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 CBX4O00257 560 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 MLNP12872 115 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 KLRC2P26717 231 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 C4orf19Q8IY42 314 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 VPS37AQ8NEZ2 397 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 PDCD2LQ9BRP1 358 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 USP18Q9UMW8 372 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 REREQ9P2R6 1566 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.9■□□□□ 0.46
SHANK1-201ENST00000293441 KLHL2O95198 593 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 F9P00740 461 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 TKTL1P51854 596 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 RHOAP61586 193 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 ZNF284Q2VY69 593 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 NFKBIZQ9BYH8 718 aa17.9■□□□□ 0.46
SHANK1-201ENST00000293441 TLR8Q9NR97 1041 aaKnown RBP17.9■□□□□ 0.46
SHANK1-201ENST00000293441 IARS2Q9NSE4 1012 aaKnown RBP17.9■□□□□ 0.46
SHANK1-201ENST00000293441 EVPLLA8MZ36 301 aa17.89■□□□□ 0.46
SHANK1-201ENST00000293441 TRIM49D1C9J1S8 452 aa17.89■□□□□ 0.46
SHANK1-201ENST00000293441 CDH2P19022 906 aaPredicted RBP17.89■□□□□ 0.46
SHANK1-201ENST00000293441 PDK2Q15119 407 aa17.89■□□□□ 0.46
SHANK1-201ENST00000293441 DNAL1Q4LDG9 190 aa17.89■□□□□ 0.46
SHANK1-201ENST00000293441 EMILIN2Q9BXX0 1053 aa17.89■□□□□ 0.46
SHANK1-201ENST00000293441 RAD18Q9NS91 495 aa17.89■□□□□ 0.46
SHANK1-201ENST00000293441 RIMBP3CA6NJZ7 1639 aa17.89■□□□□ 0.46
SHANK1-201ENST00000293441 RIMBP3BA6NNM3 1639 aa17.89■□□□□ 0.46
SHANK1-201ENST00000293441 RIMBP3Q9UFD9 1639 aa17.89■□□□□ 0.46
SHANK1-201ENST00000293441 MYO1CO00159 1063 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 PLIN5Q00G26 463 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 CDY2AQ9Y6F7 541 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 CDY1Q9Y6F8 540 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 GHRP10912 638 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 CDC16Q13042 620 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 CAMK2GQ13555 558 aaPredicted RBP17.89■□□□□ 0.45
SHANK1-201ENST00000293441 PHKG1Q16816 387 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 AGBL2Q5U5Z8 902 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 ITIH5Q86UX2 942 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 FAM83AQ86UY5 434 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 PHF21AQ96BD5 680 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 UBXN6Q9BZV1 441 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 NT5MQ9NPB1 228 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 AP4E1Q9UPM8 1137 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 USP32Q8NFA0 1604 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 VCLP18206 1134 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 STIP1P31948 543 aaKnown RBP17.89■□□□□ 0.45
SHANK1-201ENST00000293441 FBXO47Q5MNV8 452 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 PGLYRP2Q96PD5 576 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 TNS2Q63HR2 1409 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 RPLP2P05387 115 aaKnown RBP17.89■□□□□ 0.45
SHANK1-201ENST00000293441 SLC29A2Q14542 456 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 FUT11Q495W5 492 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 ZNF720Q7Z2F6 126 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 APOL2Q9BQE5 337 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 FICDQ9BVA6 458 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 ROPN1BQ9BZX4 212 aaPredicted RBP17.89■□□□□ 0.45
SHANK1-201ENST00000293441 ISCUQ9H1K1 167 aa17.89■□□□□ 0.45
SHANK1-201ENST00000293441 ROPN1Q9HAT0 212 aaPredicted RBP17.89■□□□□ 0.45
SHANK1-201ENST00000293441 FGFR2P21802 821 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 PTGISQ16647 500 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 TLK2Q86UE8 772 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 PHACTR4Q8IZ21 702 aa17.88■□□□□ 0.45
SHANK1-201ENST00000293441 SEMA6BQ9H3T3 888 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms