RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 SETD9Q8NE22 299 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 PHTF1Q9UMS5 762 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 CPS1P31327 1500 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 TRIM66O15016 1216 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 MAGEA10P43363 369 aaPredicted RBP8.25□□□□□ -1.09
LIMD1-201ENST00000273317 MCL1Q07820 350 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 TRIM25Q14258 630 aaKnown RBP8.25□□□□□ -1.09
LIMD1-201ENST00000273317 IER5Q5VY09 327 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 GPAT2Q6NUI2 795 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 UTS2BQ765I0 119 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 SVOPQ8N4V2 548 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 KYQ8NBH2 561 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 CHP1Q99653 195 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 QTRT2Q9H974 415 aaKnown RBP8.25□□□□□ -1.09
LIMD1-201ENST00000273317 CES2O00748 559 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 CLPTM1O96005 669 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 POP5Q969H6 163 aaKnown RBP8.25□□□□□ -1.09
LIMD1-201ENST00000273317 GJB4Q9NTQ9 266 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 UBA2Q9UBT2 640 aaPredicted RBP8.25□□□□□ -1.09
LIMD1-201ENST00000273317 KLHL3Q9UH77 587 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 FLT1P17948 1338 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 MYMKA6NI61 221 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 FOXN1O15353 648 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 GHRP10912 638 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 CUL2Q13617 745 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 CCDC81Q6ZN84 652 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 HPDLQ96IR7 371 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 TMBIM4Q9HC24 238 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.25□□□□□ -1.09
LIMD1-201ENST00000273317 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.25□□□□□ -1.094e-8■□□□□ 9.5
LIMD1-201ENST00000273317 TBKBP1A7MCY6 615 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 NDUFA5Q16718 116 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 TRIQKQ629K1 86 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 KLHL25Q9H0H3 589 aa8.25□□□□□ -1.09
LIMD1-201ENST00000273317 MMADHCQ9H3L0 296 aaPredicted RBP8.25□□□□□ -1.09
LIMD1-201ENST00000273317 MYO5BQ9ULV0 1848 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.24□□□□□ -1.09
LIMD1-201ENST00000273317 MPOP05164 745 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 SERPIND1P05546 499 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 PTPN4P29074 926 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 TRIM28Q13263 835 aaKnown RBP8.24□□□□□ -1.09
LIMD1-201ENST00000273317 INAQ16352 499 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 FAM45BPQ6NSW5 357 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 C16orf86Q6ZW13 317 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 SLC20A1Q8WUM9 679 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 ISCA1Q9BUE6 129 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 L2HGDHQ9H9P8 463 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 PDGFCQ9NRA1 345 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 SHOC2Q9UQ13 582 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 SH3BP1Q9Y3L3 701 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 FAM47E-STBD1D6RA91 191 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 ALOX15P16050 662 aaPredicted RBP8.24□□□□□ -1.09
LIMD1-201ENST00000273317 ACAD10Q6JQN1 1059 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 SLC44A5Q8NCS7 719 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 NYAP2Q9P242 653 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 SRP68Q9UHB9 627 aaKnown RBP8.24□□□□□ -1.09
LIMD1-201ENST00000273317 MAD2L1Q13257 205 aaPredicted RBP8.24□□□□□ -1.09
LIMD1-201ENST00000273317 SPDYCQ5MJ68 293 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 MTERF3Q96E29 417 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 AGAP3Q96P47 875 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 KPNA4O00629 521 aaPredicted RBP8.24□□□□□ -1.09
LIMD1-201ENST00000273317 FAM58BPP0C7Q3 252 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 SAMD3Q8N6K7 520 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 ZNF512Q96ME7 567 aaPredicted RBP8.24□□□□□ -1.09
LIMD1-201ENST00000273317 SMIM31A0A1B0GVY4 71 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 MAGEB16A2A368 324 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 RRN3P2A6NIE6 340 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 CNOT3O75175 753 aaKnown RBP8.24□□□□□ -1.09
LIMD1-201ENST00000273317 KATNA1O75449 491 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 ETFBP38117 255 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 ATXN3P54252 364 aaPredicted RBP8.24□□□□□ -1.09
LIMD1-201ENST00000273317 RTL3Q8N8U3 475 aaKnown RBP8.24□□□□□ -1.09
LIMD1-201ENST00000273317 ATP6V0D2Q8N8Y2 350 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 RMND5BQ96G75 393 aaPredicted RBP8.24□□□□□ -1.09
LIMD1-201ENST00000273317 FAM111AQ96PZ2 611 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 PARK7Q99497 189 aaKnown RBP8.24□□□□□ -1.09
LIMD1-201ENST00000273317 UBAP1Q9NZ09 502 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 TBX20Q9UMR3 447 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 LRCH1Q9Y2L9 728 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 H7C4K7 107 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 CST8O60676 142 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 ALDH1A2O94788 518 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 TNFAIP8O95379 198 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 BMP10O95393 424 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 ARHGAP15Q53QZ3 475 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 MROH9Q5TGP6 573 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 CDC73Q6P1J9 531 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 EXD1Q8NHP7 514 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 CAAP1Q9H8G2 361 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 DMAP1Q9NPF5 467 aaPredicted RBP8.24□□□□□ -1.09
LIMD1-201ENST00000273317 AGPAT5Q9NUQ2 364 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 RABGEF1Q9UJ41 708 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 ALG6Q9Y672 507 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 CNTRLQ7Z7A1 2325 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 AFF2P51816 1311 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 PLA2G4FQ68DD2 849 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 ATXN2LQ8WWM7 1075 aaKnown RBP8.24□□□□□ -1.09
LIMD1-201ENST00000273317 CEP44Q9C0F1 390 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 SPASTQ9UBP0 616 aa8.24□□□□□ -1.09
LIMD1-201ENST00000273317 SNX9Q9Y5X1 595 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms