RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 AP1G2O75843 785 aa17.31■□□□□ 0.36
USP4-201ENST00000265560 RPL9P32969 192 aaKnown RBP17.31■□□□□ 0.36
USP4-201ENST00000265560 BFSP2Q13515 415 aa17.31■□□□□ 0.36
USP4-201ENST00000265560 HFE2Q6ZVN8 426 aa17.31■□□□□ 0.36
USP4-201ENST00000265560 MAATS1Q7Z4T9 603 aa17.31■□□□□ 0.36
USP4-201ENST00000265560 RSPH1Q8WYR4 309 aa17.31■□□□□ 0.36
USP4-201ENST00000265560 CCDC114Q96M63 670 aa17.31■□□□□ 0.36
USP4-201ENST00000265560 DUSP16Q9BY84 665 aa17.31■□□□□ 0.36
USP4-201ENST00000265560 COILP38432 576 aaPredicted RBP17.3■□□□□ 0.36
USP4-201ENST00000265560 TAP1Q03518 808 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 FAAP100Q0VG06 881 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 ZC3H12AQ5D1E8 599 aaKnown RBP17.3■□□□□ 0.36
USP4-201ENST00000265560 ABI1Q8IZP0 508 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 ADAM32Q8TC27 787 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 AENQ8WTP8 325 aaKnown RBP17.3■□□□□ 0.36
USP4-201ENST00000265560 FAM172AQ8WUF8 416 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 TMPRSS4Q9NRS4 437 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 NPR3P17342 541 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 ZNF143P52747 638 aaPredicted RBP17.3■□□□□ 0.36
USP4-201ENST00000265560 SLC39A5Q6ZMH5 540 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 SPOCD1Q6ZMY3 1216 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 TAB3Q8N5C8 712 aaPredicted RBP17.3■□□□□ 0.36
USP4-201ENST00000265560 CCDC33Q8N5R6 958 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 TSEN2Q8NCE0 465 aaKnown RBP17.3■□□□□ 0.36
USP4-201ENST00000265560 EXD1Q8NHP7 514 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 FAM193BQ96PV7 902 aaPredicted RBP17.3■□□□□ 0.36
USP4-201ENST00000265560 TSPAN18Q96SJ8 248 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 HNRNPABQ99729 332 aaKnown RBP17.3■□□□□ 0.36
USP4-201ENST00000265560 SMOQ99835 787 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 PLVAPQ9BX97 442 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 CALCOCO1Q9P1Z2 691 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 MAN1A1P33908 653 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 OVOS1Q6IE37 1185 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 HDXQ7Z353 690 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 SLITRK6Q9H5Y7 841 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.3■□□□□ 0.36
USP4-201ENST00000265560 UTP11Q9Y3A2 253 aaKnown RBP17.3■□□□□ 0.36
USP4-201ENST00000265560 PCDHB7Q9Y5E2 793 aa17.3■□□□□ 0.36
USP4-201ENST00000265560 NRP1O14786 923 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 ODC1P11926 461 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 PTGIRP43119 386 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 LHX1P48742 406 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 PLEKHG4Q58EX7 1191 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 MTERF4Q7Z6M4 381 aaKnown RBP17.29■□□□□ 0.36
USP4-201ENST00000265560 KCTD6Q8NC69 237 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 MYLPFQ96A32 169 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 LRRC4Q9HBW1 653 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 USP17L7P0C7H9 530 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 ECHS1P30084 290 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 SDC4P31431 198 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 TKTL1P51854 596 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 PLTPP55058 493 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 CA9Q16790 459 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 SDHAF4Q5VUM1 108 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.29■□□□□ 0.36
USP4-201ENST00000265560 FAM35AQ86V20 835 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 ZMIZ2Q8NF64 920 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 PGLYRP2Q96PD5 576 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 CNPY3Q9BT09 278 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 SQORQ9Y6N5 450 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 CHD7Q9P2D1 2997 aa17.29■□□□□ 0.36
USP4-201ENST00000265560 MYO7AQ13402 2215 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 FAM200BP0CF97 657 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 ARPP19P56211 112 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 PLCB3Q01970 1234 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 KLF1Q13351 362 aaPredicted RBP17.28■□□□□ 0.36
USP4-201ENST00000265560 PPP1R7Q15435 360 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 DCAF6Q58WW2 860 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 PPP6R3Q5H9R7 873 aaPredicted RBP17.28■□□□□ 0.36
USP4-201ENST00000265560 NIPA2Q8N8Q9 360 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 NETO2Q8NC67 525 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.28■□□□□ 0.36
USP4-201ENST00000265560 CAND2O75155 1236 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 TRUB2O95900 331 aaKnown RBP17.28■□□□□ 0.36
USP4-201ENST00000265560 EOMESO95936 686 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 MCM3P25205 808 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 CHRNA3P32297 505 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 GYS2P54840 703 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 SYPL2Q5VXT5 272 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 TMEM173Q86WV6 379 aaPredicted RBP17.28■□□□□ 0.36
USP4-201ENST00000265560 RCOR2Q8IZ40 523 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 GLIS1Q8NBF1 620 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 UBN1Q9NPG3 1134 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 ASNSD1Q9NWL6 643 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 DNPEPQ9ULA0 475 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 LRFN2Q9ULH4 789 aa17.28■□□□□ 0.36
USP4-201ENST00000265560 POLR3GO15318 223 aaPredicted RBP17.27■□□□□ 0.36
USP4-201ENST00000265560 SKIP12755 728 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 ETS1P14921 441 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 CDKN2BP42772 138 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 NRLP54845 237 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 FAM189BP81408 668 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 MAP9Q49MG5 647 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 COLGALT2Q8IYK4 626 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 DEFB106AQ8N104 65 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 MYCBPAPQ8TBZ2 947 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 PAWRQ96IZ0 340 aaKnown RBP17.27■□□□□ 0.36
USP4-201ENST00000265560 ERP44Q9BS26 406 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 ULBP1Q9BZM6 244 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 DCLK3Q9C098 648 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms