RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 RABGAP1LQ5R372 815 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 CEP128Q6ZU80 1094 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 ENOSF1Q7L5Y1 443 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 TRIM50Q86XT4 487 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.49□□□□□ -0.41
USHBP1-201ENST00000252597 RIBC1Q8N443 379 aaPredicted RBP12.49□□□□□ -0.41
USHBP1-201ENST00000252597 PHC3Q8NDX5 983 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 PIP4K2CQ8TBX8 421 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 TMC2Q8TDI7 906 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 DENND1AQ8TEH3 1009 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 INPP5DQ92835 1189 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 HEXIM2Q96MH2 286 aaKnown RBP12.49□□□□□ -0.41
USHBP1-201ENST00000252597 STRA6Q9BX79 667 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 XPNPEP1Q9NQW7 623 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 SENP1Q9P0U3 644 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 PRR5-ARHGAP8B1AHC4 643 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 M0QYV0 167 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 TRPA1O75762 1119 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 DGKIO75912 1065 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 SORBS2O94875 1100 aaKnown RBP12.49□□□□□ -0.41
USHBP1-201ENST00000252597 ZBED1O96006 694 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 PSAPP07602 524 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 GNAZP19086 355 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 ARHGAP8P85298 464 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 LPCAT4Q643R3 524 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 UNC5BQ8IZJ1 945 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 C7orf31Q8N865 590 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 RBM15BQ8NDT2 890 aaKnown RBP12.49□□□□□ -0.41
USHBP1-201ENST00000252597 MFSD14AQ96MC6 490 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 PGLYRP2Q96PD5 576 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 EBF4Q9BQW3 602 aa12.49□□□□□ -0.41
USHBP1-201ENST00000252597 COL11A2P13942 1736 aaPredicted RBP12.48□□□□□ -0.41
USHBP1-201ENST00000252597 YDJCA8MPS7 323 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 ENTPD3O75355 529 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 DGAT1O75907 488 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 PDE1BQ01064 536 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 ROR1Q01973 937 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 PSMD6Q15008 389 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 STYK1Q6J9G0 422 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 CRLF3Q8IUI8 442 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 ARHGAP24Q8N264 748 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 TTC16Q8NEE8 873 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 MCPH1Q8NEM0 835 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 E2F7Q96AV8 911 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 ASCC2Q9H1I8 757 aaPredicted RBP12.48□□□□□ -0.41
USHBP1-201ENST00000252597 FIS1Q9Y3D6 152 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 TMEM191CA6NGB0 347 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 SPDYE2BA6NHP3 402 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 NEMP1O14524 444 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 TYROBPO43914 113 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 SPDYE6P0CI01 402 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 SKIV2L2P42285 1042 aaKnown RBP12.48□□□□□ -0.41
USHBP1-201ENST00000252597 HMGCS2P54868 508 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 CDK16Q00536 496 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 ZNF252P-AS1Q0IIN9 211 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 GRIK3Q13003 919 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 ACVR2BQ13705 512 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 WASHC2DQ5SRD0 308 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 IL31Q6EBC2 164 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 RIPOR1Q6ZS17 1223 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 DENND5BQ6ZUT9 1274 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 RNF149Q8NC42 400 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 CLEC4DQ8WXI8 215 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 NMD3Q96D46 503 aaKnown RBP12.48□□□□□ -0.41
USHBP1-201ENST00000252597 PGBD4Q96DM1 585 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 ADPGKQ9BRR6 497 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 UNKQ9C0B0 810 aaKnown RBP12.48□□□□□ -0.41
USHBP1-201ENST00000252597 PCDH9Q9HC56 1237 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 MAN1C1Q9NR34 630 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 PXMP2Q9NR77 195 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 SLX4Q8IY92 1834 aa12.48□□□□□ -0.41
USHBP1-201ENST00000252597 CXorf49A8MYA2 514 aaPredicted RBP12.47□□□□□ -0.41
USHBP1-201ENST00000252597 SNUPNO95149 360 aaKnown RBP12.47□□□□□ -0.41
USHBP1-201ENST00000252597 CALB1P05937 261 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 ATP6V1B1P15313 513 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 CDKN2BP42772 138 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 VWA5B1Q5TIE3 1220 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 TREML1Q86YW5 311 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 DEPDC1BQ8WUY9 529 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 TRAPPC12Q8WVT3 735 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 VPS11Q9H270 941 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 KANSL3Q9P2N6 904 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 KRT37O76014 449 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 PGM3O95394 542 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 CYP1A1P04798 512 aaPredicted RBP12.47□□□□□ -0.41
USHBP1-201ENST00000252597 TCN1P20061 433 aaPredicted RBP12.47□□□□□ -0.41
USHBP1-201ENST00000252597 MMP8P22894 467 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 PHKA2P46019 1235 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 ASPHQ12797 758 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 TRIP10Q15642 601 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 PLEKHA7Q6IQ23 1121 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 DLK2Q6UY11 383 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 SDCCAG8Q86SQ7 713 aaPredicted RBP12.47□□□□□ -0.41
USHBP1-201ENST00000252597 SCUBE1Q8IWY4 988 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 SH3TC2Q8TF17 1288 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 MOCOSQ96EN8 888 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 ZNF333Q96JL9 665 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 SMYD2Q9NRG4 433 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 TXNDC16Q9P2K2 825 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 SLC24A2Q9UI40 661 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms