RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 YWHAZP63104 245 aaKnown RBP14.21□□□□□ -0.13
LDLR-201ENST00000252444 FSCBQ5H9T9 825 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 PPM1LQ5SGD2 360 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 FRA10AC1Q70Z53 315 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 SPON2Q9BUD6 331 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 HEMGNQ9BXL5 484 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 MYH1P12882 1939 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 ATP9AO75110 1047 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 SMIM24O75264 130 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 SMPD1P17405 629 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 TKTL1P51854 596 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 EPC2Q52LR7 807 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 NPAS4Q8IUM7 802 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 ANKRD52Q8NB46 1076 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 SLC30A5Q8TAD4 765 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 CD99L2Q8TCZ2 262 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 SENP6Q9GZR1 1112 aaPredicted RBP14.21□□□□□ -0.13
LDLR-201ENST00000252444 SIK2Q9H0K1 926 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 TRIM33Q9UPN9 1127 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 RREB1Q92766 1687 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 DAB1O75553 588 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 POLBP06746 335 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 MEI1Q5TIA1 1274 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 UBA3Q8TBC4 463 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 HNRNPLLQ8WVV9 542 aaKnown RBP14.21□□□□□ -0.13
LDLR-201ENST00000252444 HDAC11Q96DB2 347 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 HAUS8Q9BT25 410 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 RCOR3Q9P2K3 495 aaPredicted RBP14.21□□□□□ -0.13
LDLR-201ENST00000252444 ATG7O95352 703 aa14.21□□□□□ -0.14
LDLR-201ENST00000252444 ASS1P00966 412 aaKnown RBP14.21□□□□□ -0.14
LDLR-201ENST00000252444 PTPN1P18031 435 aaKnown RBP14.21□□□□□ -0.14
LDLR-201ENST00000252444 CDH18Q13634 790 aa14.21□□□□□ -0.14
LDLR-201ENST00000252444 ARHGEF7Q14155 803 aa14.21□□□□□ -0.14
LDLR-201ENST00000252444 MORF4L2Q15014 288 aa14.21□□□□□ -0.14
LDLR-201ENST00000252444 MOB2Q70IA6 237 aa14.21□□□□□ -0.14
LDLR-201ENST00000252444 KATNAL2Q8IYT4 538 aa14.21□□□□□ -0.14
LDLR-201ENST00000252444 RIN2Q8WYP3 895 aaPredicted RBP14.21□□□□□ -0.14
LDLR-201ENST00000252444 MTBPQ96DY7 904 aa14.21□□□□□ -0.14
LDLR-201ENST00000252444 FAM167BQ9BTA0 163 aa14.21□□□□□ -0.14
LDLR-201ENST00000252444 O00370 1275 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 DCTN3O75935 186 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 NAA20P61599 178 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 SPOPLQ6IQ16 392 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 PHLDB2Q86SQ0 1253 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 PRKD2Q9BZL6 878 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 THAP2Q9H0W7 228 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 SIGLEC16A6NMB1 481 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 HNRNPCL1O60812 293 aaKnown RBP14.2□□□□□ -0.14
LDLR-201ENST00000252444 TADA3O75528 432 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 NR1D1P20393 614 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 IFNAR2P48551 515 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 PDIA2Q13087 525 aaKnown RBP14.2□□□□□ -0.14
LDLR-201ENST00000252444 RETSATQ6NUM9 610 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 GDAP1Q8TB36 358 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 ZBTB18Q99592 522 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 ADAMTS5Q9UNA0 930 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 NEMP1O14524 444 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 XPO1O14980 1071 aaKnown RBP14.2□□□□□ -0.14
LDLR-201ENST00000252444 CDC25CP30307 473 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 BRMS1LQ5PSV4 323 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 DSG4Q86SJ6 1040 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 GANQ9H2C0 597 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 TXLNGQ9NUQ3 528 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 MAFFQ9ULX9 164 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 AP4E1Q9UPM8 1137 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 PLAAQ9Y263 795 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 NPR3P17342 541 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 SCNN1AP37088 669 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 SPOCD1Q6ZMY3 1216 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 CTU1Q7Z7A3 348 aaKnown RBP14.2□□□□□ -0.14
LDLR-201ENST00000252444 SPATA24Q86W54 205 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 CRLF3Q8IUI8 442 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 LEMD2Q8NC56 503 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 FAM172AQ8WUF8 416 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 ERP44Q9BS26 406 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 USP18Q9UMW8 372 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 RIPK3Q9Y572 518 aa14.2□□□□□ -0.14
LDLR-201ENST00000252444 ZSCAN5CA6NGD5 496 aaPredicted RBP14.19□□□□□ -0.14
LDLR-201ENST00000252444 GPR25O00155 361 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 INHAP05111 366 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 ACO1P21399 889 aaKnown RBP14.19□□□□□ -0.14
LDLR-201ENST00000252444 SPRP35270 261 aaPredicted RBP14.19□□□□□ -0.14
LDLR-201ENST00000252444 CRHR2Q13324 411 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 ARID5BQ14865 1188 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 TBCCQ15814 346 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 FAM171A1Q5VUB5 890 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 IL31Q6EBC2 164 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 ZNF571Q7Z3V5 609 aaPredicted RBP14.19□□□□□ -0.14
LDLR-201ENST00000252444 WDR75Q8IWA0 830 aaKnown RBP14.19□□□□□ -0.14
LDLR-201ENST00000252444 SUGP1Q8IWZ8 645 aaKnown RBP14.19□□□□□ -0.14
LDLR-201ENST00000252444 ATP6V1E2Q96A05 226 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 SAMD11Q96NU1 681 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 NMRK2Q9NPI5 230 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 CNGB3Q9NQW8 809 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 LY75O60449 1722 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 CDH16O75309 829 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 AVPR1AP37288 418 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 TBX4P57082 545 aa14.19□□□□□ -0.14
LDLR-201ENST00000252444 TTC39BQ5VTQ0 682 aaPredicted RBP14.19□□□□□ -0.14
LDLR-201ENST00000252444 TMC7Q7Z402 723 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms