RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeastyeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHM2YLR058C TPT1Q12272 230 aaKnown RBP7.5□□□□□ -1.21
SHM2YLR058C COA3Q3E7B2 85 aa7.5□□□□□ -1.21
SHM2YLR058C AIM29P36154 155 aa7.49□□□□□ -1.21
SHM2YLR058C YIL059CP40520 121 aa7.49□□□□□ -1.21
SHM2YLR058C URM1P40554 99 aaPredicted RBP7.49□□□□□ -1.21
SHM2YLR058C YMR103CQ04436 120 aa7.49□□□□□ -1.21
SHM2YLR058C YMR122W-AQ3E842 84 aa7.49□□□□□ -1.21
SHM2YLR058C ADH2P00331 348 aaKnown RBP7.48□□□□□ -1.21
SHM2YLR058C TRP1P00912 224 aa7.48□□□□□ -1.21
SHM2YLR058C ERI1P62651 68 aaKnown RBP7.48□□□□□ -1.21
SHM2YLR058C APS1P35181 156 aa7.47□□□□□ -1.21
SHM2YLR058C RPR2P40571 144 aa7.47□□□□□ -1.21
SHM2YLR058C SCS22Q6Q595 175 aa7.47□□□□□ -1.21
SHM2YLR058C LSM8P47093 109 aaKnown RBP7.46□□□□□ -1.21
SHM2YLR058C YLR050CQ12155 161 aaKnown RBP7.46□□□□□ -1.21
SHM2YLR058C SPC1P46965 94 aa7.45□□□□□ -1.22
SHM2YLR058C SEC11P15367 167 aa7.44□□□□□ -1.22
SHM2YLR058C FUN14P18411 198 aa7.44□□□□□ -1.22
SHM2YLR058C YEL008WP40001 126 aa7.44□□□□□ -1.22
SHM2YLR058C HAC1P41546 238 aa7.44□□□□□ -1.22
SHM2YLR058C CGR1P53188 120 aa7.44□□□□□ -1.22
SHM2YLR058C YKL070WP36087 169 aa7.44□□□□□ -1.22
SHM2YLR058C YCL021W-AQ96VH3 125 aa7.43□□□□□ -1.22
SHM2YLR058C RPL31AP0C2H8 113 aaKnown RBP7.42□□□□□ -1.22
SHM2YLR058C YER085CP40058 173 aa7.42□□□□□ -1.22
SHM2YLR058C NUP42P49686 430 aaKnown RBP7.42□□□□□ -1.22
SHM2YLR058C YGL230CP53074 147 aa7.42□□□□□ -1.22
SHM2YLR058C RPL33AP05744 107 aaKnown RBP7.41□□□□□ -1.22
SHM2YLR058C RPL33BP41056 107 aaKnown RBP7.41□□□□□ -1.22
SHM2YLR058C YLL066W-BQ8TGJ7 56 aa7.41□□□□□ -1.22
SHM2YLR058C ATP15P21306 62 aa7.4□□□□□ -1.22
SHM2YLR058C MSL1P40567 111 aaPredicted RBP7.39□□□□□ -1.23
SHM2YLR058C BET5Q03630 159 aa7.39□□□□□ -1.23
SHM2YLR058C PBA1Q05778 276 aa7.39□□□□□ -1.23
SHM2YLR058C NAT5Q08689 176 aa7.39□□□□□ -1.23
SHM2YLR058C YDL157CQ12082 118 aa7.39□□□□□ -1.23
SHM2YLR058C FYV7Q12247 151 aa7.39□□□□□ -1.23
SHM2YLR058C YPR010C-AA5Z2X5 72 aa7.37□□□□□ -1.23
SHM2YLR058C YDL022C-AP0C5L6 82 aa7.37□□□□□ -1.23
SHM2YLR058C MRPL44P19956 98 aa7.37□□□□□ -1.23
SHM2YLR058C SCM4P32564 187 aa7.37□□□□□ -1.23
SHM2YLR058C YBR219CP38317 127 aa7.37□□□□□ -1.23
SHM2YLR058C ERG28P40030 148 aa7.37□□□□□ -1.23
SHM2YLR058C AIM11P87275 137 aa7.37□□□□□ -1.23
SHM2YLR058C YMR320WQ04897 101 aa7.37□□□□□ -1.23
SHM2YLR058C MDN1Q12019 4910 aaKnown RBP7.37□□□□□ -1.23
SHM2YLR058C YPL261CQ08976 102 aa7.36□□□□□ -1.23
SHM2YLR058C DFM1Q12743 341 aaKnown RBP7.36□□□□□ -1.23
SHM2YLR058C DIF1O13577 133 aa7.35□□□□□ -1.23
SHM2YLR058C RTC6O14464 93 aa7.35□□□□□ -1.23
SHM2YLR058C YDR115WQ04598 105 aa7.35□□□□□ -1.23
SHM2YLR058C YLR194CQ05777 254 aa7.35□□□□□ -1.23
SHM2YLR058C YKL044WP36092 106 aa7.35□□□□□ -1.23
SHM2YLR058C YAR029WP39549 74 aa7.34□□□□□ -1.23
SHM2YLR058C YMR295CQ03559 197 aa7.34□□□□□ -1.23
SHM2YLR058C ATP5P09457 212 aa7.33□□□□□ -1.24
SHM2YLR058C YCR007CP25354 239 aa7.33□□□□□ -1.24
SHM2YLR058C RPL32P38061 130 aaKnown RBP7.33□□□□□ -1.24
SHM2YLR058C SVP26P38869 228 aa7.33□□□□□ -1.24
SHM2YLR058C RRT15Q3E811 62 aa7.33□□□□□ -1.24
SHM2YLR058C ENV10Q99382 181 aa7.33□□□□□ -1.24
SHM2YLR058C YKR041WP36134 250 aa7.32□□□□□ -1.24
SHM2YLR058C YPL073CP40323 161 aa7.31□□□□□ -1.24
SHM2YLR058C SHU1P38751 150 aa7.3□□□□□ -1.24
SHM2YLR058C YEL067CP39978 195 aa7.29□□□□□ -1.24
SHM2YLR058C RPL11AP0C0W9 174 aaKnown RBP7.28□□□□□ -1.24
SHM2YLR058C RPL18AP0CX49 186 aaKnown RBP7.28□□□□□ -1.24
SHM2YLR058C RPL18BP0CX50 186 aaKnown RBP7.28□□□□□ -1.24
SHM2YLR058C PEX17P40155 199 aa7.28□□□□□ -1.24
SHM2YLR058C RPC10P40422 70 aa7.28□□□□□ -1.24
SHM2YLR058C RPL11BQ3E757 174 aaPredicted RBP7.28□□□□□ -1.24
SHM2YLR058C YDL085C-AQ3E7B7 68 aaKnown RBP7.28□□□□□ -1.24
SHM2YLR058C YPR195CQ06594 109 aa7.27□□□□□ -1.24
SHM2YLR058C YBL081WP38180 368 aaKnown RBP7.27□□□□□ -1.25
SHM2YLR058C CIN5P40917 295 aa7.27□□□□□ -1.25
SHM2YLR058C SAE3P89114 91 aa7.27□□□□□ -1.25
SHM2YLR058C YAL064WP39711 94 aa7.26□□□□□ -1.25
SHM2YLR058C YNR077CP53758 84 aa7.26□□□□□ -1.25
SHM2YLR058C VTS1Q08831 523 aaKnown RBP RIP-Chip data7.26□□□□□ -1.25not detected
SHM2YLR058C YMR175W-AQ3E766 64 aa7.26□□□□□ -1.25
SHM2YLR058C RPF1P38805 295 aaKnown RBP7.25□□□□□ -1.25
SHM2YLR058C COX14P39103 70 aa7.25□□□□□ -1.25
SHM2YLR058C VTC1P40046 129 aaRIP-Chip data7.25□□□□□ -1.25not detected
SHM2YLR058C MRPS12P53732 153 aa7.25□□□□□ -1.25
SHM2YLR058C PAU23Q07987 124 aa7.25□□□□□ -1.25
SHM2YLR058C PAU17Q12370 124 aa7.25□□□□□ -1.25
SHM2YLR058C YAL065CO13511 128 aa7.24□□□□□ -1.25
SHM2YLR058C RPL28P02406 149 aaKnown RBP7.24□□□□□ -1.25
SHM2YLR058C IGO2Q9P305 131 aa7.23□□□□□ -1.25
SHM2YLR058C YAR023CD6VPM8 179 aa7.22□□□□□ -1.25
SHM2YLR058C PPT2Q12036 173 aa7.22□□□□□ -1.25
SHM2YLR058C QCR8P08525 94 aa7.21□□□□□ -1.25
SHM2YLR058C TOA2P32774 122 aa7.21□□□□□ -1.25
SHM2YLR058C YFR057WP43625 151 aa7.2□□□□□ -1.26
SHM2YLR058C ADH1P00330 348 aaKnown RBP7.19□□□□□ -1.26
SHM2YLR058C YNL190WP53872 204 aa7.19□□□□□ -1.26
SHM2YLR058C UGX2P32772 223 aa7.18□□□□□ -1.26
SHM2YLR058C OXA1P39952 402 aa7.18□□□□□ -1.26
SHM2YLR058C YDL241WQ07738 123 aa7.18□□□□□ -1.26
SHM2YLR058C ANB1P19211 157 aa7.18□□□□□ -1.26
Retrieved 100 of 5,963 RNA–protein pairs in 51.8 ms