RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeast

Gene RTR1, Length 681 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTR1	YER139C	YOR034C-A	Q3E735	80 aa		0.47	□□□□□ -2.33
RTR1	YER139C	KSH1	Q8TGJ3	72 aa		0.47	□□□□□ -2.33
RTR1	YER139C	BPT1	P14772	1559 aa		0.46	□□□□□ -2.34
RTR1	YER139C	BUD23	P25627	275 aa	Predicted RBP	0.46	□□□□□ -2.34
RTR1	YER139C	MRP17	P28778	131 aa		0.46	□□□□□ -2.34
RTR1	YER139C	YIL086C	P40503	102 aa		0.46	□□□□□ -2.34
RTR1	YER139C	IMP2	P46972	177 aa		0.46	□□□□□ -2.34
RTR1	YER139C	MRPS12	P53732	153 aa		0.46	□□□□□ -2.34
RTR1	YER139C	YDR210W	Q03482	75 aa		0.46	□□□□□ -2.34
RTR1	YER139C	ZEO1	Q08245	113 aa		0.46	□□□□□ -2.34
RTR1	YER139C	PDR11	P40550	1411 aa		0.46	□□□□□ -2.34
RTR1	YER139C	RPL43A	P0CX25	92 aa	Known RBP	0.45	□□□□□ -2.34
RTR1	YER139C	RPL43B	P0CX26	92 aa		0.45	□□□□□ -2.34
RTR1	YER139C	HMRA2	P0CY13	119 aa		0.45	□□□□□ -2.34
RTR1	YER139C	PAU16	P35994	123 aa		0.45	□□□□□ -2.34
RTR1	YER139C	EMC5	P40540	141 aa		0.45	□□□□□ -2.34
RTR1	YER139C	PAU15	P40585	124 aa		0.45	□□□□□ -2.34
RTR1	YER139C	LCL1	Q02786	101 aa		0.45	□□□□□ -2.34
RTR1	YER139C	YBR072C-A	Q3E794	53 aa		0.45	□□□□□ -2.34
RTR1	YER139C	DNA2	P38859	1522 aa		0.44	□□□□□ -2.34
RTR1	YER139C	YBR292C	P38357	123 aa		0.44	□□□□□ -2.34
RTR1	YER139C	YDR010C	Q12426	110 aa		0.44	□□□□□ -2.34
RTR1	YER139C	YLR307C-A	Q3E825	87 aa		0.44	□□□□□ -2.34
RTR1	YER139C	SRB8	P25648	1427 aa		0.44	□□□□□ -2.34
RTR1	YER139C	YLR255C	O13574	117 aa		0.43	□□□□□ -2.34
RTR1	YER139C	ROX3	P25046	220 aa		0.43	□□□□□ -2.34
RTR1	YER139C	SHU1	P38751	150 aa		0.43	□□□□□ -2.34
RTR1	YER139C	MPC2	P38857	129 aa		0.43	□□□□□ -2.34
RTR1	YER139C	GCV3	P39726	170 aa	Predicted RBP	0.43	□□□□□ -2.34
RTR1	YER139C	AIM19	P40502	157 aa		0.43	□□□□□ -2.34
RTR1	YER139C	YPL038W-A	Q3E7B4	63 aa		0.43	□□□□□ -2.34
RTR1	YER139C	RSF2	P46974	1380 aa		0.43	□□□□□ -2.34
RTR1	YER139C	TY4B-J	P47024	1803 aa		0.43	□□□□□ -2.34
RTR1	YER139C	YLR157W-E	P0CF00	54 aa		0.42	□□□□□ -2.34
RTR1	YER139C	PDX3	P38075	228 aa	Known RBP	0.42	□□□□□ -2.34
RTR1	YER139C	SNA2	P56508	79 aa		0.42	□□□□□ -2.34
RTR1	YER139C	YDR029W	Q12111	104 aa		0.42	□□□□□ -2.34
RTR1	YER139C	YCR095W-A	Q3E787	52 aa		0.42	□□□□□ -2.34
RTR1	YER139C	URA2	P07259	2214 aa	Known RBP	0.42	□□□□□ -2.34
RTR1	YER139C	HMRA1	P0CY11	126 aa		0.41	□□□□□ -2.34
RTR1	YER139C	RSM18	P40033	138 aa		0.41	□□□□□ -2.34
RTR1	YER139C	MSL1	P40567	111 aa	Predicted RBP	0.41	□□□□□ -2.34
RTR1	YER139C	YDR042C	Q03205	200 aa		0.41	□□□□□ -2.34
RTR1	YER139C	NHP10	Q03435	203 aa		0.41	□□□□□ -2.34
RTR1	YER139C	SUS1	Q6WNK7	96 aa		0.41	□□□□□ -2.34
RTR1	YER139C	SSN2	P38931	1420 aa		0.4	□□□□□ -2.34
RTR1	YER139C	MRPL38	P35996	138 aa	Predicted RBP	0.4	□□□□□ -2.35
RTR1	YER139C	SNU13	P39990	126 aa	Known RBP	0.4	□□□□□ -2.35
RTR1	YER139C	RPS29B	P41058	56 aa	Known RBP	0.4	□□□□□ -2.35
RTR1	YER139C	PAU5	P43575	122 aa		0.4	□□□□□ -2.35
RTR1	YER139C	MRX7	P53869	86 aa		0.4	□□□□□ -2.35
RTR1	YER139C	ICY1	Q04329	127 aa		0.4	□□□□□ -2.35
RTR1	YER139C	YKL068W-A	Q3E826	78 aa		0.4	□□□□□ -2.35
RTR1	YER139C	SEC16	P48415	2195 aa	Known RBP	0.4	□□□□□ -2.35
RTR1	YER139C	RPS11A	P0CX47	156 aa	Known RBP	0.39	□□□□□ -2.35
RTR1	YER139C	RPS11B	P0CX48	156 aa	Known RBP	0.39	□□□□□ -2.35
RTR1	YER139C	YHR173C	P38864	112 aa		0.39	□□□□□ -2.35
RTR1	YER139C	YMR082C	Q04276	118 aa		0.39	□□□□□ -2.35
RTR1	YER139C	YCR075W-A	Q3E830	75 aa		0.39	□□□□□ -2.35
RTR1	YER139C	YCL001W-B	Q96VH2	84 aa		0.39	□□□□□ -2.35
RTR1	YER139C	YRF1-3	P0CX14	1859 aa		0.39	□□□□□ -2.35
RTR1	YER139C	YRF1-7	P0CX15	1859 aa		0.39	□□□□□ -2.35
RTR1	YER139C	BRR2	P32639	2163 aa	Known RBP	0.39	□□□□□ -2.35
RTR1	YER139C	NTE1	Q04958	1679 aa		0.38	□□□□□ -2.35
RTR1	YER139C	AUA1	P32450	94 aa		0.38	□□□□□ -2.35
RTR1	YER139C	NHP2	P32495	156 aa	Predicted RBP	0.38	□□□□□ -2.35
RTR1	YER139C	PAU20	Q08322	120 aa		0.38	□□□□□ -2.35
RTR1	YER139C	LTE1	P07866	1435 aa		0.38	□□□□□ -2.35
RTR1	YER139C	ECM12	O13529	151 aa		0.37	□□□□□ -2.35
RTR1	YER139C	PAU1	P0CE88	120 aa		0.37	□□□□□ -2.35
RTR1	YER139C	PAU14	P0CE89	120 aa		0.37	□□□□□ -2.35
RTR1	YER139C	PAU6	P0CE90	120 aa		0.37	□□□□□ -2.35
RTR1	YER139C	PAU18	P0CE91	120 aa		0.37	□□□□□ -2.35
RTR1	YER139C	PAU8	P0CE92	120 aa		0.37	□□□□□ -2.35
RTR1	YER139C	PAU11	P0CE93	120 aa		0.37	□□□□□ -2.35
RTR1	YER139C	YBL071C	P38185	102 aa		0.37	□□□□□ -2.35
RTR1	YER139C	PAU13	P38725	120 aa		0.37	□□□□□ -2.35
RTR1	YER139C	BSC4	P53841	131 aa		0.37	□□□□□ -2.35
RTR1	YER139C	PAU10	Q03050	120 aa		0.37	□□□□□ -2.35
RTR1	YER139C	PAU9	Q3E770	120 aa		0.37	□□□□□ -2.35
RTR1	YER139C	RRT15	Q3E811	62 aa		0.37	□□□□□ -2.35
RTR1	YER139C	YNR034W-A	Q3E841	98 aa		0.37	□□□□□ -2.35
RTR1	YER139C	SKI3	P17883	1432 aa	Known RBP	0.37	□□□□□ -2.35
RTR1	YER139C	PDR10	P51533	1564 aa		0.36	□□□□□ -2.35
RTR1	YER139C	GSC2	P40989	1895 aa		0.36	□□□□□ -2.35
RTR1	YER139C	PAU4	P53427	120 aa		0.36	□□□□□ -2.35
RTR1	YER139C	YMR175W-A	Q3E766	64 aa		0.36	□□□□□ -2.35
RTR1	YER139C	MHF2	Q3E829	80 aa		0.36	□□□□□ -2.35
RTR1	YER139C	TY1B-H	O13535	1793 aa		0.35	□□□□□ -2.35
RTR1	YER139C	GDB1	Q06625	1536 aa		0.35	□□□□□ -2.35
RTR1	YER139C	COX7	P10174	60 aa		0.35	□□□□□ -2.35
RTR1	YER139C	RPA12	P32529	125 aa	Known RBP	0.35	□□□□□ -2.35
RTR1	YER139C	SPC1	P46965	94 aa		0.35	□□□□□ -2.35
RTR1	YER139C	SCP1	Q08873	200 aa		0.35	□□□□□ -2.35
RTR1	YER139C	YNL042W-B	Q3E7Z2	85 aa		0.35	□□□□□ -2.35
RTR1	YER139C	LAA1	P39526	2014 aa		0.34	□□□□□ -2.36
RTR1	YER139C	RPL38	P49167	78 aa	Known RBP	0.34	□□□□□ -2.36
RTR1	YER139C	YNL190W	P53872	204 aa		0.34	□□□□□ -2.36
RTR1	YER139C	YOR343C	Q12484	108 aa		0.34	□□□□□ -2.36
RTR1	YER139C	POL2	P21951	2222 aa	Known RBP	0.34	□□□□□ -2.36

Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms