RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C RPO41P13433 1351 aaKnown RBP-0.19□□□□□ -2.44
RUB1YDR139C YHR138CP38841 114 aaPredicted RBP-0.21□□□□□ -2.44
RUB1YDR139C YDR210WQ03482 75 aa-0.21□□□□□ -2.44
RUB1YDR139C YLR042CQ07990 161 aa-0.21□□□□□ -2.44
RUB1YDR139C RPS11AP0CX47 156 aaKnown RBP-0.22□□□□□ -2.44
RUB1YDR139C RPS11BP0CX48 156 aaKnown RBP-0.22□□□□□ -2.44
RUB1YDR139C RTR2Q12378 196 aa-0.22□□□□□ -2.44
RUB1YDR139C YPL038W-AQ3E7B4 63 aa-0.22□□□□□ -2.44
RUB1YDR139C YGR164WP53291 111 aa-0.23□□□□□ -2.45
RUB1YDR139C YCR101CP25607 182 aa-0.24□□□□□ -2.45
RUB1YDR139C PAU15P40585 124 aa-0.24□□□□□ -2.45
RUB1YDR139C YLR419WQ06698 1435 aaKnown RBP-0.24□□□□□ -2.45
RUB1YDR139C PAU16P35994 123 aa-0.25□□□□□ -2.45
RUB1YDR139C APS2Q00381 147 aa-0.25□□□□□ -2.45
RUB1YDR139C HUR1P45820 110 aa-0.26□□□□□ -2.45
RUB1YDR139C VMA21P41806 77 aa-0.27□□□□□ -2.45
RUB1YDR139C COX12Q01519 83 aa-0.27□□□□□ -2.45
RUB1YDR139C YNL198CP40166 100 aa-0.28□□□□□ -2.45
RUB1YDR139C SRB6P32570 121 aa-0.3□□□□□ -2.46
RUB1YDR139C YRF1-2P40105 1681 aa-0.3□□□□□ -2.46
RUB1YDR139C BUD23P25627 275 aaPredicted RBP-0.31□□□□□ -2.46
RUB1YDR139C SWC7Q06707 132 aa-0.31□□□□□ -2.46
RUB1YDR139C TY1B-BLQ12490 1755 aa-0.32□□□□□ -2.46
RUB1YDR139C MRX7P53869 86 aa-0.32□□□□□ -2.46
RUB1YDR139C WIP1Q2V2P8 89 aa-0.32□□□□□ -2.46
RUB1YDR139C SGF11Q03067 99 aa-0.33□□□□□ -2.46
RUB1YDR139C MRPL38P35996 138 aaPredicted RBP-0.34□□□□□ -2.46
RUB1YDR139C SSN2P38931 1420 aa-0.35□□□□□ -2.47
RUB1YDR139C YFR009W-AP0C5M9 85 aa-0.35□□□□□ -2.47
RUB1YDR139C YBR016WP38216 128 aa-0.35□□□□□ -2.47
RUB1YDR139C YIR021W-AQ3E739 70 aa-0.35□□□□□ -2.47
RUB1YDR139C ICY1Q04329 127 aa-0.36□□□□□ -2.47
RUB1YDR139C SRB8P25648 1427 aa-0.37□□□□□ -2.47
RUB1YDR139C YBR292CP38357 123 aa-0.37□□□□□ -2.47
RUB1YDR139C RPC10P40422 70 aa-0.37□□□□□ -2.47
RUB1YDR139C RSF2P46974 1380 aa-0.37□□□□□ -2.47
RUB1YDR139C MRP17P28778 131 aa-0.39□□□□□ -2.47
RUB1YDR139C YCR095W-AQ3E787 52 aa-0.39□□□□□ -2.47
RUB1YDR139C SNA2P56508 79 aa-0.4□□□□□ -2.47
RUB1YDR139C YIL134C-AQ45U18 67 aa-0.41□□□□□ -2.48
RUB1YDR139C NTE1Q04958 1679 aa-0.41□□□□□ -2.48
RUB1YDR139C SPP41P38904 1435 aa-0.41□□□□□ -2.48
RUB1YDR139C PAU20Q08322 120 aa-0.42□□□□□ -2.48
RUB1YDR139C PDX3P38075 228 aaKnown RBP-0.43□□□□□ -2.48
RUB1YDR139C RSM18P40033 138 aa-0.43□□□□□ -2.48
RUB1YDR139C RPL38P49167 78 aaKnown RBP-0.43□□□□□ -2.48
RUB1YDR139C YOS1Q3E834 85 aa-0.43□□□□□ -2.48
RUB1YDR139C LYS2P07702 1392 aa-0.44□□□□□ -2.48
RUB1YDR139C BPT1P14772 1559 aa-0.44□□□□□ -2.48
RUB1YDR139C YRF1-1P0CX20 1796 aa-0.44□□□□□ -2.48
RUB1YDR139C YRF1-5P0CX21 1796 aa-0.44□□□□□ -2.48
RUB1YDR139C YRF1-8P0CX22 1796 aa-0.44□□□□□ -2.48
RUB1YDR139C YJR107C-AP0CT86 78 aa-0.44□□□□□ -2.48
RUB1YDR139C MIC10Q96VH5 97 aa-0.44□□□□□ -2.48
RUB1YDR139C TY1B-LR3P0C2I6 1755 aaKnown RBP-0.45□□□□□ -2.48
RUB1YDR139C TY1B-PR3P0C2J1 1755 aaKnown RBP-0.45□□□□□ -2.48
RUB1YDR139C CAT8P39113 1433 aa-0.45□□□□□ -2.48
RUB1YDR139C YER039C-AP0CD97 72 aa-0.45□□□□□ -2.48
RUB1YDR139C PAU6P0CE90 120 aa-0.45□□□□□ -2.48
RUB1YDR139C PAU18P0CE91 120 aa-0.45□□□□□ -2.48
RUB1YDR139C YNR034W-AQ3E841 98 aa-0.45□□□□□ -2.48
RUB1YDR139C KRE5P22023 1365 aa-0.45□□□□□ -2.48
RUB1YDR139C AIM19P40502 157 aa-0.46□□□□□ -2.48
RUB1YDR139C COX7P10174 60 aa-0.48□□□□□ -2.49
RUB1YDR139C BUD4P47136 1447 aa-0.48□□□□□ -2.49
RUB1YDR139C TY1B-BRQ12193 1756 aa-0.49□□□□□ -2.49
RUB1YDR139C UTP20P35194 2493 aaKnown RBP-0.49□□□□□ -2.49
RUB1YDR139C PAU5P43575 122 aa-0.49□□□□□ -2.49
RUB1YDR139C GNA1P43577 159 aaPredicted RBP-0.49□□□□□ -2.49
RUB1YDR139C YOR304C-AO14468 76 aa-0.5□□□□□ -2.49
RUB1YDR139C PAU1P0CE88 120 aa-0.5□□□□□ -2.49
RUB1YDR139C PAU14P0CE89 120 aa-0.5□□□□□ -2.49
RUB1YDR139C PAU8P0CE92 120 aa-0.5□□□□□ -2.49
RUB1YDR139C PAU11P0CE93 120 aa-0.5□□□□□ -2.49
RUB1YDR139C PAU13P38725 120 aa-0.5□□□□□ -2.49
RUB1YDR139C PAU10Q03050 120 aa-0.5□□□□□ -2.49
RUB1YDR139C PAU9Q3E770 120 aa-0.5□□□□□ -2.49
RUB1YDR139C YBL071CP38185 102 aa-0.51□□□□□ -2.49
RUB1YDR139C HKR1P41809 1802 aa-0.51□□□□□ -2.49
RUB1YDR139C YGR025WP53216 100 aa-0.51□□□□□ -2.49
RUB1YDR139C MIX14Q04341 121 aa-0.51□□□□□ -2.49
RUB1YDR139C YDR381C-AQ3E6R5 114 aa-0.51□□□□□ -2.49
RUB1YDR139C YCR108CQ3E819 63 aa-0.51□□□□□ -2.49
RUB1YDR139C UBC4P15731 148 aa-0.52□□□□□ -2.49
RUB1YDR139C ROX3P25046 220 aa-0.53□□□□□ -2.49
RUB1YDR139C PAU4P53427 120 aa-0.54□□□□□ -2.5
RUB1YDR139C YMR103CQ04436 120 aa-0.54□□□□□ -2.5
RUB1YDR139C YNL042W-BQ3E7Z2 85 aa-0.54□□□□□ -2.5
RUB1YDR139C Q0032Q9ZZX7 96 aa-0.54□□□□□ -2.5
RUB1YDR139C UBC5P15732 148 aa-0.55□□□□□ -2.5
RUB1YDR139C YMR090WQ04304 227 aaKnown RBP-0.55□□□□□ -2.5
RUB1YDR139C YDR246W-AQ3E763 66 aa-0.55□□□□□ -2.5
RUB1YDR139C TY1B-PR2P0C2J0 1756 aa-0.55□□□□□ -2.5
RUB1YDR139C SEN1Q00416 2231 aaKnown RBP-0.56□□□□□ -2.5
RUB1YDR139C YHL005CP38752 130 aa-0.57□□□□□ -2.5
RUB1YDR139C EMC5P40540 141 aa-0.57□□□□□ -2.5
RUB1YDR139C TY3B-IQ7LHG5 1498 aaKnown RBP-0.57□□□□□ -2.5
RUB1YDR139C BPH1P25356 2167 aa-0.57□□□□□ -2.5
RUB1YDR139C DNF3Q12674 1656 aa-0.58□□□□□ -2.5
RUB1YDR139C TOM6P33448 61 aa-0.58□□□□□ -2.5
Retrieved 100 of 5,963 RNA–protein pairs in 10.6 ms