RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 GPRIN1Q7Z2K8 1008 aa21.18■□□□□ 0.98
CLN3-250ENST00000636839 MRPL42Q9Y6G3 142 aaKnown RBP21.18■□□□□ 0.98
CLN3-250ENST00000636839 FAM200BP0CF97 657 aa21.17■□□□□ 0.98
CLN3-250ENST00000636839 SETSIPP0DME0 302 aa21.17■□□□□ 0.98
CLN3-250ENST00000636839 PLA2G4AP47712 749 aa21.17■□□□□ 0.98
CLN3-250ENST00000636839 TAS2R40P59535 323 aa21.17■□□□□ 0.98
CLN3-250ENST00000636839 FPGSQ05932 587 aa21.17■□□□□ 0.98
CLN3-250ENST00000636839 OLFML1Q6UWY5 402 aa21.17■□□□□ 0.98
CLN3-250ENST00000636839 STK32AQ8WU08 396 aa21.17■□□□□ 0.98
CLN3-250ENST00000636839 DNAI2Q9GZS0 605 aa21.17■□□□□ 0.98
CLN3-250ENST00000636839 RNF216Q9NWF9 866 aaPredicted RBP21.17■□□□□ 0.98
CLN3-250ENST00000636839 XPO1O14980 1071 aaKnown RBP21.17■□□□□ 0.98
CLN3-250ENST00000636839 FGBP02675 491 aa21.17■□□□□ 0.98
CLN3-250ENST00000636839 TCP1P17987 556 aaKnown RBP21.17■□□□□ 0.98
CLN3-250ENST00000636839 FGFR3P22607 806 aa21.17■□□□□ 0.98
CLN3-250ENST00000636839 BTG3Q14201 252 aaPredicted RBP21.17■□□□□ 0.98
CLN3-250ENST00000636839 SLC39A12Q504Y0 691 aa21.17■□□□□ 0.98
CLN3-250ENST00000636839 RAB6CQ53S08 254 aa21.17■□□□□ 0.98
CLN3-250ENST00000636839 SPOUT1Q5T280 376 aaKnown RBP21.17■□□□□ 0.98
CLN3-250ENST00000636839 MSANTD4Q8NCY6 345 aa21.17■□□□□ 0.98
CLN3-250ENST00000636839 SPATA18Q8TC71 538 aa21.17■□□□□ 0.98
CLN3-250ENST00000636839 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.17■□□□□ 0.983e-6■□□□□ 10.1
CLN3-250ENST00000636839 RAB6CQ9H0N0 254 aa21.17■□□□□ 0.98
CLN3-250ENST00000636839 SF3B1O75533 1304 aaKnown RBP eCLIP21.16■□□□□ 0.983e-9■■■■■ 164.7
CLN3-250ENST00000636839 RPL34P49207 117 aaKnown RBP21.16■□□□□ 0.98
CLN3-250ENST00000636839 PEX5P50542 639 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 GSCP56915 257 aaPredicted RBP21.16■□□□□ 0.98
CLN3-250ENST00000636839 ADIGQ0VDE8 80 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 MRPL58Q14197 206 aaKnown RBP21.16■□□□□ 0.98
CLN3-250ENST00000636839 WHAMMP3Q1A5X7 153 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 SH3PXD2AQ5TCZ1 1133 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 PRSS55Q6UWB4 352 aaPredicted RBP21.16■□□□□ 0.98
CLN3-250ENST00000636839 ARFGAP1Q8N6T3 406 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 CALR3Q96L12 384 aaKnown RBP21.16■□□□□ 0.98
CLN3-250ENST00000636839 PGLYRP2Q96PD5 576 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 WDR35Q9P2L0 1181 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 SYN3O14994 580 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 CYP2F1P24903 491 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 FLT3P36888 993 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 ARPP19P56211 112 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 TSPY1Q01534 308 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 PPIGQ13427 754 aaKnown RBP eCLIP21.16■□□□□ 0.986e-7■■□□□ 11.8
CLN3-250ENST00000636839 LLGL1Q15334 1064 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 CTXN3Q4LDR2 81 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 TMEM240Q5SV17 173 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 KCNT2Q6UVM3 1135 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 ZCWPW1Q9H0M4 648 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 TMEM59LQ9UK28 342 aa21.16■□□□□ 0.98
CLN3-250ENST00000636839 PTPRSQ13332 1948 aa21.15■□□□□ 0.98
CLN3-250ENST00000636839 UQCRHLA0A096LP55 91 aa21.15■□□□□ 0.98
CLN3-250ENST00000636839 CEP104O60308 925 aa21.15■□□□□ 0.98
CLN3-250ENST00000636839 BAIAP3O94812 1187 aa21.15■□□□□ 0.98
CLN3-250ENST00000636839 UQCRHP07919 91 aa21.15■□□□□ 0.98
CLN3-250ENST00000636839 SLC6A3Q01959 620 aa21.15■□□□□ 0.98
CLN3-250ENST00000636839 MNS1Q8NEH6 495 aa21.15■□□□□ 0.98
CLN3-250ENST00000636839 IGSF21Q96ID5 467 aa21.15■□□□□ 0.98
CLN3-250ENST00000636839 YME1L1Q96TA2 773 aa21.15■□□□□ 0.98
CLN3-250ENST00000636839 IP6K2Q9UHH9 426 aa21.15■□□□□ 0.98
CLN3-250ENST00000636839 ARHGEF37A1IGU5 675 aa21.14■□□□□ 0.98
CLN3-250ENST00000636839 HHLA1C9JL84 531 aa21.14■□□□□ 0.98
CLN3-250ENST00000636839 PSMA2P25787 234 aa21.14■□□□□ 0.98
CLN3-250ENST00000636839 SSR1P43307 286 aaKnown RBP21.14■□□□□ 0.98
CLN3-250ENST00000636839 TUBB2AQ13885 445 aa21.14■□□□□ 0.98
CLN3-250ENST00000636839 ATP13A4Q4VNC1 1196 aa21.14■□□□□ 0.98
CLN3-250ENST00000636839 TXNRD3NBQ6F5E7 133 aa21.14■□□□□ 0.98
CLN3-250ENST00000636839 STKLD1Q8NE28 680 aa21.14■□□□□ 0.98
CLN3-250ENST00000636839 SMARCD1Q96GM5 515 aa21.14■□□□□ 0.98
CLN3-250ENST00000636839 HSFY1Q96LI6 401 aa21.14■□□□□ 0.98
CLN3-250ENST00000636839 TUBB2BQ9BVA1 445 aa21.14■□□□□ 0.98
CLN3-250ENST00000636839 EFCAB14O75071 495 aa21.14■□□□□ 0.97
CLN3-250ENST00000636839 EFEMP2O95967 443 aa21.14■□□□□ 0.97
CLN3-250ENST00000636839 RPL17P18621 184 aaKnown RBP21.14■□□□□ 0.97
CLN3-250ENST00000636839 CTNNA1P35221 906 aaKnown RBP21.14■□□□□ 0.97
CLN3-250ENST00000636839 GJC1P36383 396 aa21.14■□□□□ 0.97
CLN3-250ENST00000636839 ADCY1Q08828 1119 aa21.14■□□□□ 0.97
CLN3-250ENST00000636839 TTC9BQ8N6N2 239 aa21.14■□□□□ 0.97
CLN3-250ENST00000636839 RXFP2Q8WXD0 754 aa21.14■□□□□ 0.97
CLN3-250ENST00000636839 EPC1Q9H2F5 836 aa21.14■□□□□ 0.97
CLN3-250ENST00000636839 ABI2Q9NYB9 513 aaPredicted RBP21.14■□□□□ 0.97
CLN3-250ENST00000636839 PCDHA3Q9Y5H8 950 aa21.14■□□□□ 0.97
CLN3-250ENST00000636839 ADAM12O43184 909 aa21.13■□□□□ 0.97
CLN3-250ENST00000636839 TADA3O75528 432 aa21.13■□□□□ 0.97
CLN3-250ENST00000636839 PYGMP11217 842 aa21.13■□□□□ 0.97
CLN3-250ENST00000636839 TFE3P19532 575 aaPredicted RBP21.13■□□□□ 0.97
CLN3-250ENST00000636839 TKTL1P51854 596 aa21.13■□□□□ 0.97
CLN3-250ENST00000636839 SLC8A3P57103 927 aa21.13■□□□□ 0.97
CLN3-250ENST00000636839 C15orf59Q2T9L4 293 aaPredicted RBP21.13■□□□□ 0.97
CLN3-250ENST00000636839 CC2D1AQ6P1N0 951 aaPredicted RBP21.13■□□□□ 0.97
CLN3-250ENST00000636839 NOA1Q8NC60 698 aaKnown RBP21.13■□□□□ 0.97
CLN3-250ENST00000636839 TTPALQ9BTX7 342 aa21.13■□□□□ 0.97
CLN3-250ENST00000636839 ADAM33Q9BZ11 813 aa21.13■□□□□ 0.97
CLN3-250ENST00000636839 C2CD4BA6NLJ0 364 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 C2CD2LO14523 706 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 TAP1Q03518 808 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 SDHAF4Q5VUM1 108 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 SPATA2LQ8IUW3 424 aaPredicted RBP21.12■□□□□ 0.97
CLN3-250ENST00000636839 ATAD1Q8NBU5 361 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 ACSF2Q96CM8 615 aaPredicted RBP21.12■□□□□ 0.97
CLN3-250ENST00000636839 CFAP57Q96MR6 1250 aa21.12■□□□□ 0.97
CLN3-250ENST00000636839 CSNK1G1Q9HCP0 422 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms