RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 FAM86C1Q9NVL1 165 aa19.19■□□□□ 0.66
CLN3-239ENST00000628023 MRPS23Q9Y3D9 190 aaKnown RBP19.19■□□□□ 0.66
CLN3-239ENST00000628023 AP1G2O75843 785 aa19.18■□□□□ 0.66
CLN3-239ENST00000628023 UBXN1Q04323 297 aa19.18■□□□□ 0.66
CLN3-239ENST00000628023 ARHGAP44Q17R89 818 aa19.18■□□□□ 0.66
CLN3-239ENST00000628023 FILIP1LQ4L180 1135 aa19.18■□□□□ 0.66
CLN3-239ENST00000628023 DNAJB7Q7Z6W7 309 aaPredicted RBP19.18■□□□□ 0.66
CLN3-239ENST00000628023 TMEM105Q8N8V8 129 aa19.18■□□□□ 0.66
CLN3-239ENST00000628023 CYFIP2Q96F07 1278 aa19.18■□□□□ 0.66
CLN3-239ENST00000628023 KREMEN1Q96MU8 473 aa19.18■□□□□ 0.66
CLN3-239ENST00000628023 GCNAQ96QF7 691 aa19.18■□□□□ 0.66
CLN3-239ENST00000628023 EPS15L1Q9UBC2 864 aa19.18■□□□□ 0.66
CLN3-239ENST00000628023 MAGED2Q9UNF1 606 aaPredicted RBP19.18■□□□□ 0.66
CLN3-239ENST00000628023 F8VP50 259 aa19.17■□□□□ 0.66
CLN3-239ENST00000628023 STK25O00506 426 aa19.17■□□□□ 0.66
CLN3-239ENST00000628023 ZNF197O14709 1029 aa19.17■□□□□ 0.66
CLN3-239ENST00000628023 SERPINC1P01008 464 aa19.17■□□□□ 0.66
CLN3-239ENST00000628023 FAM200BP0CF97 657 aa19.17■□□□□ 0.66
CLN3-239ENST00000628023 CSH1P0DML2 217 aa19.17■□□□□ 0.66
CLN3-239ENST00000628023 CSH2P0DML3 217 aa19.17■□□□□ 0.66
CLN3-239ENST00000628023 ACO1P21399 889 aaKnown RBP19.17■□□□□ 0.66
CLN3-239ENST00000628023 RFX1P22670 979 aa19.17■□□□□ 0.66
CLN3-239ENST00000628023 HS6ST3Q8IZP7 471 aa19.17■□□□□ 0.66
CLN3-239ENST00000628023 FUKQ8N0W3 1084 aa19.17■□□□□ 0.66
CLN3-239ENST00000628023 UBR7Q8N806 425 aa19.17■□□□□ 0.66
CLN3-239ENST00000628023 RBBP8NLQ8NC74 664 aaPredicted RBP19.17■□□□□ 0.66
CLN3-239ENST00000628023 STKLD1Q8NE28 680 aa19.17■□□□□ 0.66
CLN3-239ENST00000628023 JAKMIP2Q96AA8 810 aa19.17■□□□□ 0.66
CLN3-239ENST00000628023 DMAP1Q9NPF5 467 aaPredicted RBP19.17■□□□□ 0.66
CLN3-239ENST00000628023 SLC38A8A6NNN8 435 aa19.16■□□□□ 0.66
CLN3-239ENST00000628023 GFRA3O60609 400 aa19.16■□□□□ 0.66
CLN3-239ENST00000628023 USP8P40818 1118 aa19.16■□□□□ 0.66
CLN3-239ENST00000628023 KCNMA1Q12791 1236 aa19.16■□□□□ 0.66
CLN3-239ENST00000628023 RAPGEF1Q13905 1077 aa19.16■□□□□ 0.66
CLN3-239ENST00000628023 SGO2Q562F6 1265 aa19.16■□□□□ 0.66
CLN3-239ENST00000628023 SIX5Q8N196 739 aa19.16■□□□□ 0.66
CLN3-239ENST00000628023 ING5Q8WYH8 240 aa19.16■□□□□ 0.66
CLN3-239ENST00000628023 C8orf48Q96LL4 319 aa19.16■□□□□ 0.66
CLN3-239ENST00000628023 HNRNPABQ99729 332 aaKnown RBP19.16■□□□□ 0.66
CLN3-239ENST00000628023 SIX2Q9NPC8 291 aa19.16■□□□□ 0.66
CLN3-239ENST00000628023 WNT16Q9UBV4 365 aa19.16■□□□□ 0.66
CLN3-239ENST00000628023 DNAJC12Q9UKB3 198 aa19.16■□□□□ 0.66
CLN3-239ENST00000628023 ZFP37Q9Y6Q3 630 aaPredicted RBP19.16■□□□□ 0.66
CLN3-239ENST00000628023 PTPRDP23468 1912 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 FGF19O95750 216 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 PAEPP09466 180 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 LAMP2P13473 410 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 AOC1P19801 751 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 GABRR2P28476 465 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 CACNA2D1P54289 1103 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 MAP3K7CLP57077 242 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 IFRD2Q12894 506 aaPredicted RBP19.15■□□□□ 0.66
CLN3-239ENST00000628023 SYCP1Q15431 976 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 SLC5A9Q2M3M2 681 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 PPP1R26Q5T8A7 1209 aaPredicted RBP19.15■□□□□ 0.66
CLN3-239ENST00000628023 DENND5BQ6ZUT9 1274 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 PAQR9Q6ZVX9 377 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 APTXQ7Z2E3 356 aaKnown RBP19.15■□□□□ 0.66
CLN3-239ENST00000628023 SLC44A3Q8N4M1 653 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 ITFG1Q8TB96 612 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 SPATA17Q96L03 361 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 CEP295NLQ96MC4 621 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 MYADMQ96S97 322 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 ZNF334Q9HCZ1 680 aaPredicted RBP19.15■□□□□ 0.66
CLN3-239ENST00000628023 AVENQ9NQS1 362 aaPredicted RBP19.15■□□□□ 0.66
CLN3-239ENST00000628023 FAM207AQ9NSI2 230 aaPredicted RBP19.15■□□□□ 0.66
CLN3-239ENST00000628023 EHD2Q9NZN4 543 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 UXTQ9UBK9 157 aaPredicted RBP19.15■□□□□ 0.66
CLN3-239ENST00000628023 DOCK6Q96HP0 2047 aa19.15■□□□□ 0.66
CLN3-239ENST00000628023 A0A1W2PRU2 124 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 LRRC10BA6NIK2 292 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 VDRP11473 427 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 CEBPBP17676 345 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 KLK7P49862 253 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 SLC8A3P57103 927 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 ZNF445P59923 1031 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 GOLGA7BQ2TAP0 167 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 PRSS36Q5K4E3 855 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 KLHDC7AQ5VTJ3 777 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 ARHGAP17Q68EM7 881 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 TMC8Q8IU68 726 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 RNF214Q8ND24 703 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 RSAD2Q8WXG1 361 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 TCEAL4Q96EI5 215 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 SLITRK6Q9H5Y7 841 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 HESX1Q9UBX0 185 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 KIAA1257Q9ULG3 409 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 FHOD1Q9Y613 1164 aa19.14■□□□□ 0.65
CLN3-239ENST00000628023 ZFHX2Q9C0A1 2572 aaPredicted RBP19.14■□□□□ 0.65
CLN3-239ENST00000628023 NOL4O94818 638 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 CFHP08603 1231 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 SRFP11831 508 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 UCHL3P15374 230 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 GJA1P17302 382 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 NPR3P17342 541 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 CDC25CP30307 473 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 CCR2P41597 374 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 EPHA5P54756 1037 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 ARHGAP15Q53QZ3 475 aa19.13■□□□□ 0.65
CLN3-239ENST00000628023 NEK11Q8NG66 645 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms