RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ZNF197O14709 1029 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 FGF19O95750 216 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 PNMA6AP0CW24 399 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 MYL4P12829 197 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 FSHRP23945 695 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 BCAT1P54687 386 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 NTHL1P78549 312 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 LCLAT1Q6UWP7 414 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 CLEC20AQ6ZU45 233 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 DENND5BQ6ZUT9 1274 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 GCNAQ96QF7 691 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 KCNK16Q96T55 309 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 NUP58Q9BVL2 599 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 GPR88Q9GZN0 384 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 CSNK1G1Q9HCP0 422 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 AVENQ9NQS1 362 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 TMEM30AQ9NV96 361 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 UXTQ9UBK9 157 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 MAGED2Q9UNF1 606 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 DENND4AQ7Z401 1863 aa20.22■□□□□ 0.83
SQSTM1-216ENST00000626660 ZNF638Q14966 1978 aaKnown RBP20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 NOTCH4Q99466 2003 aa20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 RTN3O95197 1032 aaPredicted RBP20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 CALCAP01258 141 aa20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 SOX5P35711 763 aa20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 JAM2P57087 298 aa20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 BST2Q10589 180 aaKnown RBP20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 SARM1Q6SZW1 724 aa20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 FMNL3Q8IVF7 1028 aa20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 HS6ST3Q8IZP7 471 aa20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 NUP93Q8N1F7 819 aa20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 ADAMTS19Q8TE59 1207 aa20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 IQCDQ96DY2 449 aa20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 PHF7Q9BWX1 381 aaPredicted RBP20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 TRIM5Q9C035 493 aa20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 PNPLA8Q9NP80 782 aa20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 MRPS23Q9Y3D9 190 aaKnown RBP20.21■□□□□ 0.83
SQSTM1-216ENST00000626660 PATJQ8NI35 1801 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 M0QYV0 167 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 SETSIPP0DME0 302 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 IL9P15248 144 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 CDC25CP30307 473 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 CLCN1P35523 988 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 PBX1P40424 430 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 PDE6CP51160 858 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 EPHA5P54756 1037 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 MTMR3Q13615 1198 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 TMC8Q8IU68 726 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 STKLD1Q8NE28 680 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 ZMIZ2Q8NF64 920 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 ZNF606Q8WXB4 792 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 TRMT2BQ96GJ1 504 aaKnown RBP20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 EDEM3Q9BZQ6 932 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 ZNF334Q9HCZ1 680 aaPredicted RBP20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 MYO6Q9UM54 1294 aa20.2■□□□□ 0.82
SQSTM1-216ENST00000626660 BEST1O76090 585 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 GFPT2O94808 682 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 MICAL2O94851 1124 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 CCDC172P0C7W6 258 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 HMGA1P17096 107 aaKnown RBP20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 IFRD2Q12894 506 aaPredicted RBP20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 MEA1Q16626 185 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 FIGNQ5HY92 759 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 GET4Q7L5D6 327 aaPredicted RBP20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 OTOP3Q7RTS5 596 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 SLC47A2Q86VL8 602 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 TTC30AQ86WT1 665 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 UBA3Q8TBC4 463 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 ACSF2Q96CM8 615 aaPredicted RBP20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 MYRFLQ96LU7 910 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 UHRF1Q96T88 793 aaPredicted RBP20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 ZSWIM1Q9BR11 485 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 LRRC3Q9BY71 257 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 UBXN6Q9BZV1 441 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 ACP6Q9NPH0 428 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 COMMD8Q9NX08 183 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 NR2E1Q9Y466 385 aa20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 TCF20Q9UGU0 1960 aaKnown RBP20.19■□□□□ 0.82
SQSTM1-216ENST00000626660 XPO1O14980 1071 aaKnown RBP20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 YWHAQP27348 245 aa20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 GABRR2P28476 465 aa20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 GBP2P32456 591 aaPredicted RBP20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 KRT9P35527 623 aa20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 SLC5A3P53794 718 aa20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 PDE4CQ08493 712 aa20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 ARHGAP15Q53QZ3 475 aa20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 ZNF397Q8NF99 534 aaPredicted RBP20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 TTLL2Q9BWV7 592 aa20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 PDCL3Q9H2J4 239 aa20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 FBXO44Q9H4M3 255 aa20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 PRKAG3Q9UGI9 489 aa20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 DOCK8Q8NF50 2099 aa20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 ITIH6Q6UXX5 1313 aa20.18■□□□□ 0.82
SQSTM1-216ENST00000626660 TNFRSF10BO14763 440 aa20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 CYP11B1P15538 503 aa20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 SSTR3P32745 418 aaPredicted RBP20.17■□□□□ 0.82
SQSTM1-216ENST00000626660 SLC5A9Q2M3M2 681 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms