RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 FAM167AQ96KS9 214 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 MARK4Q96L34 752 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 FYTTD1Q96QD9 318 aaKnown RBP3.76□□□□□ -1.81
SCN1A-208ENST00000625916 GABRQQ9UN88 632 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 MRPS17Q9Y2R5 130 aaKnown RBP3.76□□□□□ -1.81
SCN1A-208ENST00000625916 PLEKHM1Q9Y4G2 1056 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 CD8B2A6NJW9 211 aa3.75□□□□□ -1.81
SCN1A-208ENST00000625916 H3BUI4 141 aa3.75□□□□□ -1.81
SCN1A-208ENST00000625916 AP4M1O00189 453 aa3.75□□□□□ -1.81
SCN1A-208ENST00000625916 RNF8O76064 485 aa3.75□□□□□ -1.81
SCN1A-208ENST00000625916 HDCP19113 662 aa3.75□□□□□ -1.81
SCN1A-208ENST00000625916 VIPR2P41587 438 aa3.75□□□□□ -1.81
SCN1A-208ENST00000625916 MAP2K6P52564 334 aa3.75□□□□□ -1.81
SCN1A-208ENST00000625916 SOX8P57073 446 aa3.75□□□□□ -1.81
SCN1A-208ENST00000625916 HTRA4P83105 476 aaPredicted RBP3.75□□□□□ -1.81
SCN1A-208ENST00000625916 E2F1Q01094 437 aa3.75□□□□□ -1.81
SCN1A-208ENST00000625916 C10orf25Q5T742 122 aa3.75□□□□□ -1.81
SCN1A-208ENST00000625916 MEX3CQ5U5Q3 659 aaKnown RBP3.75□□□□□ -1.81
SCN1A-208ENST00000625916 MEPCEQ7L2J0 689 aaKnown RBP3.75□□□□□ -1.81
SCN1A-208ENST00000625916 CCDC17Q96LX7 622 aa3.75□□□□□ -1.81
SCN1A-208ENST00000625916 USP35Q9P2H5 1018 aa3.75□□□□□ -1.81
SCN1A-208ENST00000625916 LY6G6EA0A0G2JKS1 128 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 TCRBV5S1A1TA0A578 114 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 H3BNX3 289 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 KATNA1O75449 491 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 ABLIM3O94929 683 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 A1BGP04217 495 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 ALPLP05186 524 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 MYCLP12524 364 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-208ENST00000625916 HOXD9P28356 352 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-208ENST00000625916 ADORA2AP29274 412 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 LRPAP1P30533 357 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 ZNF91Q05481 1191 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 RNASE12Q5GAN4 147 aaKnown RBP3.74□□□□□ -1.81
SCN1A-208ENST00000625916 EMC10Q5UCC4 262 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 DPY19L3Q6ZPD9 716 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 CAND1Q86VP6 1230 aaKnown RBP3.74□□□□□ -1.81
SCN1A-208ENST00000625916 OSR1Q8TAX0 266 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-208ENST00000625916 MMS19Q96T76 1030 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 SLC13A1Q9BZW2 595 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 SARS2Q9NP81 518 aaKnown RBP3.74□□□□□ -1.81
SCN1A-208ENST00000625916 TRMT13Q9NUP7 481 aaKnown RBP3.74□□□□□ -1.81
SCN1A-208ENST00000625916 POT1Q9NUX5 634 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 XPR1Q9UBH6 696 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 SQORQ9Y6N5 450 aa3.74□□□□□ -1.81
SCN1A-208ENST00000625916 BTBD19C9JJ37 291 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 MYO1CO00159 1063 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 ZRANB2O95218 330 aaKnown RBP eCLIP3.73□□□□□ -1.81
SCN1A-208ENST00000625916 VNN1O95497 513 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 CSF1RP07333 972 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 CYP19A1P11511 503 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-208ENST00000625916 THBS3P49746 956 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 KRT17Q04695 432 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 MYO1EQ12965 1108 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 SEMA3AQ14563 771 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 PLS1Q14651 629 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 CYP1B1Q16678 543 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 USP45Q70EL2 814 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 BCDIN3DQ7Z5W3 292 aaKnown RBP3.73□□□□□ -1.81
SCN1A-208ENST00000625916 IZUMO1Q8IYV9 350 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 SIRT6Q8N6T7 355 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 LYZL4Q96KX0 146 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 CXorf36Q9H7Y0 433 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 SPC25Q9HBM1 224 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 AMFRQ9UKV5 643 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 PCDHA6Q9UN73 950 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 TMX2Q9Y320 296 aa3.73□□□□□ -1.81
SCN1A-208ENST00000625916 CES2O00748 559 aa3.72□□□□□ -1.81
SCN1A-208ENST00000625916 CRYABP02511 175 aaKnown RBP3.72□□□□□ -1.81
SCN1A-208ENST00000625916 HTR6P50406 440 aa3.72□□□□□ -1.81
SCN1A-208ENST00000625916 FAM50AQ14320 339 aaKnown RBP3.72□□□□□ -1.81
SCN1A-208ENST00000625916 LY6KQ17RY6 165 aa3.72□□□□□ -1.81
SCN1A-208ENST00000625916 PGS1Q32NB8 556 aa3.72□□□□□ -1.81
SCN1A-208ENST00000625916 KHDC1LQ5JSQ8 128 aa3.72□□□□□ -1.81
SCN1A-208ENST00000625916 PIM3Q86V86 326 aa3.72□□□□□ -1.81
SCN1A-208ENST00000625916 ZNF280BQ86YH2 543 aa3.72□□□□□ -1.81
SCN1A-208ENST00000625916 ABRAQ8N0Z2 381 aa3.72□□□□□ -1.81
SCN1A-208ENST00000625916 PRR18Q8N4B5 295 aa3.72□□□□□ -1.81
SCN1A-208ENST00000625916 SLC35A4Q96G79 324 aa3.72□□□□□ -1.81
SCN1A-208ENST00000625916 SIGLEC11Q96RL6 698 aa3.72□□□□□ -1.81
SCN1A-208ENST00000625916 PRR25Q96S07 402 aa3.72□□□□□ -1.81
SCN1A-208ENST00000625916 VPS33BQ9H267 617 aa3.72□□□□□ -1.81
SCN1A-208ENST00000625916 ASIC5Q9NY37 505 aa3.72□□□□□ -1.81
SCN1A-208ENST00000625916 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.72□□□□□ -1.81
SCN1A-208ENST00000625916 TNKSO95271 1327 aa3.71□□□□□ -1.81
SCN1A-208ENST00000625916 FAM90A8PA6NJQ4 464 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 PSMD9O00233 223 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 FGAP02671 866 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 FAM90A13PP0C7W8 464 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 FAM90A24PP0C7X0 464 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 CYP2C9P11712 490 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 XRCC6P12956 609 aaKnown RBP eCLIP3.71□□□□□ -1.82
SCN1A-208ENST00000625916 PHKG2P15735 406 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 CDK11BP21127 795 aaKnown RBP3.71□□□□□ -1.82
SCN1A-208ENST00000625916 RGS19P49795 217 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 PRKAG1P54619 331 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 UCP3P55916 312 aa3.71□□□□□ -1.82
SCN1A-208ENST00000625916 SUMO2P61956 95 aaKnown RBP3.71□□□□□ -1.82
SCN1A-208ENST00000625916 NKX6-1P78426 367 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-208ENST00000625916 ID2Q02363 134 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms