RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 HIF1AQ16665 826 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 SFT2D3Q587I9 215 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 KLHDC10Q6PID8 442 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 CAPN12Q6ZSI9 719 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 KSR1Q8IVT5 923 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 MARVELD2Q8N4S9 558 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 GDPD5Q8WTR4 605 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 DDI1Q8WTU0 396 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 MZB1Q8WU39 189 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 GAB3Q8WWW8 586 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 EIF2AK1Q9BQI3 630 aaKnown RBP11.3□□□□□ -0.6
UPF3A-212ENST00000619079 GBA2Q9HCG7 927 aaPredicted RBP11.3□□□□□ -0.6
UPF3A-212ENST00000619079 STRIP2Q9ULQ0 834 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 ABT1Q9ULW3 272 aaKnown RBP11.3□□□□□ -0.6
UPF3A-212ENST00000619079 ZNF148Q9UQR1 794 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 CCDC160A6NGH7 325 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 USP17L15C9J2P7 530 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 USP17L13C9JLJ4 530 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 USP17L11C9JVI0 530 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 USP17L18D6R9N7 530 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 USP17L22D6RA61 530 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 USP17L17D6RBQ6 530 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 USP17L19D6RCP7 530 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 USP17L20D6RJB6 530 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 CASQ2O14958 399 aaPredicted RBP11.29□□□□□ -0.6
UPF3A-212ENST00000619079 SMIM18P0DKX4 95 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 ETV4P43268 484 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 MAGEA10P43363 369 aaPredicted RBP11.29□□□□□ -0.6
UPF3A-212ENST00000619079 IREB2P48200 963 aaKnown RBP11.29□□□□□ -0.6
UPF3A-212ENST00000619079 CD97P48960 835 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 AQP4P55087 323 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 PLCB3Q01970 1234 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 KDSRQ06136 332 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 USP17L24Q0WX57 530 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 DLG1Q12959 904 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 MSLNQ13421 630 aaPredicted RBP11.29□□□□□ -0.6
UPF3A-212ENST00000619079 SLC44A4Q53GD3 710 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 RNASEH2BQ5TBB1 312 aaKnown RBP11.29□□□□□ -0.6
UPF3A-212ENST00000619079 ATG16L1Q676U5 607 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 USP17L6PQ6QN14 398 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 MOB2Q70IA6 237 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 ANO5Q75V66 913 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 PRPF39Q86UA1 669 aaKnown RBP11.29□□□□□ -0.6
UPF3A-212ENST00000619079 ALYREFQ86V81 257 aaKnown RBP11.29□□□□□ -0.6
UPF3A-212ENST00000619079 TREML1Q86YW5 311 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 PPM1KQ8N3J5 372 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 ALLCQ8N6M5 410 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 SMYD1Q8NB12 490 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 PYROXD1Q8WU10 500 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 CRYGNQ8WXF5 182 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 WRNIP1Q96S55 665 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 ZNF341Q9BYN7 854 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 IKZF4Q9H2S9 585 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 HERC5Q9UII4 1024 aaKnown RBP11.29□□□□□ -0.6
UPF3A-212ENST00000619079 DRG1Q9Y295 367 aaKnown RBP11.29□□□□□ -0.6
UPF3A-212ENST00000619079 FAM237BA0A1B0GVD1 139 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 TXNDC9O14530 226 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 DENRO43583 198 aaKnown RBP11.29□□□□□ -0.6
UPF3A-212ENST00000619079 CCNT2O60583 730 aaKnown RBP11.29□□□□□ -0.6
UPF3A-212ENST00000619079 PGM3O95394 542 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 GCLMP48507 274 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 PSMD7P51665 324 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 PPP3CAQ08209 521 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 ALCAMQ13740 583 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 ODR4Q5SWX8 454 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 DNAJC1Q96KC8 554 aaKnown RBP11.29□□□□□ -0.6
UPF3A-212ENST00000619079 FIZ1Q96SL8 496 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 VAV3Q9UKW4 847 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 TELO2Q9Y4R8 837 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 IKBKGQ9Y6K9 419 aa11.29□□□□□ -0.6
UPF3A-212ENST00000619079 TNFAIP8O95379 198 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 FOSP01100 380 aaPredicted RBP11.28□□□□□ -0.6
UPF3A-212ENST00000619079 BGNP21810 368 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 GPX6P59796 221 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 TBL3Q12788 808 aaKnown RBP11.28□□□□□ -0.6
UPF3A-212ENST00000619079 TRIP10Q15642 601 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 SYDE2Q5VT97 1194 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 CST9Q5W186 159 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 C12orf56Q8IXR9 622 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 RDH13Q8NBN7 331 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 TTC17Q96AE7 1141 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 CLPTM1LQ96KA5 538 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 SIKE1Q9BRV8 207 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 RBM38Q9H0Z9 239 aaKnown RBP11.28□□□□□ -0.6
UPF3A-212ENST00000619079 TMEM206Q9H813 350 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 PCDH9Q9HC56 1237 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 PPME1Q9Y570 386 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 COL2A1P02458 1487 aaPredicted RBP11.28□□□□□ -0.6
UPF3A-212ENST00000619079 A0A088AWK7 358 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 ARHGAP42A6NI28 874 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 TMEM88BA6NKF7 163 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 USP17L10C9JJH3 530 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 TFAP2AP05549 437 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 SERPINA6P08185 405 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 BMP3P12645 472 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 AOC1P19801 751 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 GLRA2P23416 452 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 ACADVLP49748 655 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 DLG4P78352 724 aa11.28□□□□□ -0.6
UPF3A-212ENST00000619079 FOLH1Q04609 750 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms