RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ERP27Q96DN0 273 aa15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 PIWIL1Q96J94 861 aaKnown RBP15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 CPXM1Q96SM3 734 aa15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 PARK7Q99497 189 aaKnown RBP15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 SDCBP2Q9H190 292 aa15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 CDC42EP4Q9H3Q1 356 aaKnown RBP15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 HOXC6P09630 235 aa15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 TBXAS1P24557 533 aaPredicted RBP15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 GAD2Q05329 585 aa15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 MMRN1Q13201 1228 aa15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 PTPN20Q4JDL3 420 aa15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 GNASQ5JWF2 1037 aa15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 IZUMO3Q5VZ72 239 aa15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 C1orf228Q6PIY5 440 aa15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 NDRG1Q92597 394 aaKnown RBP15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 B3GNT5Q9BYG0 378 aa15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 MAGEB5Q9BZ81 275 aa15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 ARHGEF3Q9NR81 526 aa15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 CYTH4Q9UIA0 394 aa15.17■□□□□ 0.02
SHROOM1-208ENST00000617339 MAPK13O15264 365 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 SPAG7O75391 227 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 NUDT17P0C025 328 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 PPP1R15BQ5SWA1 713 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 SRRM1Q8IYB3 904 aaKnown RBP15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 KCTD6Q8NC69 237 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 TRIM4Q9C037 500 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 SAYSD1Q9NPB0 183 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 CPSF3Q9UKF6 684 aaKnown RBP15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 KAT6AQ92794 2004 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 A6NHS1 94 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 M0QZ92 97 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 CES2O00748 559 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 BRAFP15056 766 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 RTP1P59025 263 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 DHX34Q14147 1143 aaKnown RBP15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 WDTC1Q8N5D0 677 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 CD101Q93033 1021 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 DDX27Q96GQ7 796 aaKnown RBP15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 TXLNGYQ9BZA5 131 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 RIPK2O43353 540 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 CST8O60676 142 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 ENTPD5O75356 428 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 CENPCQ03188 943 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 CCDC6Q16204 474 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 RFX6Q8HWS3 928 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 WDR49Q8IV35 697 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 UCMAQ8WVF2 138 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 KLF6Q99612 283 aaPredicted RBP15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 IFT122Q9HBG6 1241 aa15.16■□□□□ 0.02
SHROOM1-208ENST00000617339 PODXLO00592 558 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 PYGLP06737 847 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 RARBP10826 455 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 TNFAIP2Q03169 654 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 MGAT5Q09328 741 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 PPIL2Q13356 520 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 NBPF20Q3BBV1 942 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 NPNTQ6UXI9 565 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 DNAJB3Q8WWF6 145 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 BRI3BPQ8WY22 251 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 UTP4Q969X6 686 aaKnown RBP15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 STMN4Q9H169 189 aaPredicted RBP15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 RXFP1Q9HBX9 757 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 PIN4Q9Y237 131 aaKnown RBP15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 EPHB2P29323 1055 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 NDST1P52848 882 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 MBTD1Q05BQ5 628 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 FASTKD3Q14CZ7 662 aaKnown RBP15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 CCL14Q16627 93 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 GALNTL6Q49A17 601 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 PAN2Q504Q3 1202 aaKnown RBP15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 CWF19L1Q69YN2 538 aaKnown RBP15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 CCDC62Q6P9F0 684 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 EIF2AQ9BY44 585 aaKnown RBP15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 DCLK3Q9C098 648 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 MYLK2Q9H1R3 596 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 SIX4Q9UIU6 781 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 IGKV6D-21A0A0A0MT36 114 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 WDR91A4D1P6 747 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 GOLGA8RI6L899 631 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 AHCYL1O43865 530 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 SMPD1P17405 629 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 EDNRBP24530 442 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 ARHGAP1Q07960 439 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 MPP2Q14168 576 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 ZPBP2Q6X784 338 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 ECHDC2Q86YB7 292 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 PAF1Q8N7H5 531 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 FAM149B1Q96BN6 582 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 ACAP3Q96P50 834 aa15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 PIH1D1Q9NWS0 290 aaKnown RBP15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 TIMM13Q9Y5L4 95 aaPredicted RBP15.15■□□□□ 0.02
SHROOM1-208ENST00000617339 ATAD5Q96QE3 1844 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 FAM187AA6NFU0 413 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 CYP1A1P04798 512 aaPredicted RBP15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 BASP1P80723 227 aaKnown RBP15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 TMED2Q15363 201 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 SLC10A6Q3KNW5 377 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 BSPRYQ5W0U4 402 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 PLEKHH3Q7Z736 793 aa15.14■□□□□ 0.01
SHROOM1-208ENST00000617339 SPOCK2Q92563 424 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms