RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 AP3B1O00203 1094 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 ALOX15BO15296 676 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 SERPING1P05155 500 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 CD48P09326 243 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 DHX34Q14147 1143 aaKnown RBP10.66□□□□□ -0.7
VPS39-214ENST00000614932 EXOC3L4Q17RC7 722 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 EGFLAMQ63HQ2 1017 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 AAGABQ6PD74 315 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 POTEGQ6S5H5 508 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 C4orf22Q6V702 233 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 CYP2U1Q7Z449 544 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 LARGE2Q8N3Y3 721 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 RNF169Q8NCN4 708 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 EXD1Q8NHP7 514 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 OSCP1Q8WVF1 389 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 CCDC17Q96LX7 622 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 C7orf25Q9BPX7 421 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 TMEM39BQ9GZU3 492 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 ZNF696Q9H7X3 374 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 CCDC177Q9NQR7 707 aaPredicted RBP10.66□□□□□ -0.7
VPS39-214ENST00000614932 NEU2Q9Y3R4 380 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 PCDHGA3Q9Y5H0 932 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 LRRC37AA6NMS7 1700 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 RARBP10826 455 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 CCNE1P24864 410 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 CLK2P49760 499 aaKnown RBP10.66□□□□□ -0.7
VPS39-214ENST00000614932 ARHGAP4P98171 946 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 AMPD3Q01432 767 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 KRT76Q01546 638 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 DGKZQ13574 1117 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 TUBA3CQ13748 450 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 NCOA4Q13772 614 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 EDRF1Q3B7T1 1238 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 TBC1D10BQ4KMP7 808 aaPredicted RBP10.66□□□□□ -0.7
VPS39-214ENST00000614932 TIGD2Q4W5G0 525 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 AHI1Q8N157 1196 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 LSMEM1Q8N8F7 131 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 ICA1LQ8NDH6 482 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 RAD54LQ92698 747 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 PANX3Q96QZ0 392 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 OLFM1Q99784 485 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 NUF2Q9BZD4 464 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 GLIS2Q9BZE0 524 aaPredicted RBP10.66□□□□□ -0.7
VPS39-214ENST00000614932 EDEM3Q9BZQ6 932 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 LIN28AQ9H9Z2 209 aaKnown RBP10.66□□□□□ -0.7
VPS39-214ENST00000614932 GRHL1Q9NZI5 618 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 CEP72Q9P209 647 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 PCDHGA11Q9Y5H2 935 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 FOXO6A8MYZ6 492 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 MEIS2O14770 477 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 DENRO43583 198 aaKnown RBP10.66□□□□□ -0.7
VPS39-214ENST00000614932 CHMP2AO43633 222 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 CFBP00751 764 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 FYNP06241 537 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 MUTP22033 750 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 PON1P27169 355 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 COPB2P35606 906 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 NT5C2P49902 561 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 HNRNPFP52597 415 aaKnown RBP10.66□□□□□ -0.7
VPS39-214ENST00000614932 SLC5A3P53794 718 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 WDR4P57081 412 aaKnown RBP10.66□□□□□ -0.7
VPS39-214ENST00000614932 PSMC6P62333 389 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 APOFQ13790 326 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 RASA2Q15283 850 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 SLC18A3Q16572 532 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 LPCAT4Q643R3 524 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 CCDC62Q6P9F0 684 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 TRMT10CQ7L0Y3 403 aaKnown RBP10.66□□□□□ -0.7
VPS39-214ENST00000614932 TMC7Q7Z402 723 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 NLRX1Q86UT6 975 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 JAMLQ86YT9 394 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 ATP6V0D2Q8N8Y2 350 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 LRRC57Q8N9N7 239 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 HCAR2Q8TDS4 363 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 CYLDQ9NQC7 956 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 SCINQ9Y6U3 715 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 PCNTO95613 3336 aa10.66□□□□□ -0.7
VPS39-214ENST00000614932 ADGRA3Q8IWK6 1321 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 CENPBD1B2RD01 187 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 SULT1C4O75897 302 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 CYP1A2P05177 515 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 KRT18P05783 430 aaKnown RBP10.65□□□□□ -0.7
VPS39-214ENST00000614932 PMLP29590 882 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 IFNA8P32881 189 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 FXR2P51116 673 aaKnown RBP eCLIP10.65□□□□□ -0.7
VPS39-214ENST00000614932 STAT2P52630 851 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 ADAM17P78536 824 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 COL19A1Q14993 1142 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 COBLL1Q53SF7 1204 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 FAM83BQ5T0W9 1011 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 STYK1Q6J9G0 422 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 OGFOD2Q6N063 350 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 NANOGP8Q6NSW7 305 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 CNNM4Q6P4Q7 775 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 LVRNQ6Q4G3 990 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 LPCAT2Q7L5N7 544 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 PEX26Q7Z412 305 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 C7orf43Q8WVR3 580 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 SPOCK2Q92563 424 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 CEP63Q96MT8 703 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms