RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 KRT3P12035 628 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 AARSP49588 968 aaKnown RBP eCLIP9.4□□□□□ -0.9
CCDC47-207ENST00000612558 RWDD2BP57060 319 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 C1QTNF8P60827 252 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 RPL7AP62424 266 aaKnown RBP9.4□□□□□ -0.9
CCDC47-207ENST00000612558 PIGHQ14442 188 aaPredicted RBP9.4□□□□□ -0.9
CCDC47-207ENST00000612558 GPNMBQ14956 572 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 DCAF12L1Q5VU92 463 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 FBXO46Q6PJ61 603 aaPredicted RBP9.4□□□□□ -0.9
CCDC47-207ENST00000612558 DCLRE1AQ6PJP8 1040 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 TTC30AQ86WT1 665 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 XYLT1Q86Y38 959 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 ANKRD52Q8NB46 1076 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 B3GALNT2Q8NCR0 500 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 DBF4BQ8NFT6 615 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 SPATA18Q8TC71 538 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 URGCPQ8TCY9 931 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 SLC35F5Q8WV83 523 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 LINC01599Q8WXQ3 324 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 APBB2Q92870 758 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 MCRS1Q96EZ8 462 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 RNPC3Q96LT9 517 aaKnown RBP9.4□□□□□ -0.9
CCDC47-207ENST00000612558 MCEEQ96PE7 176 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 RHOXF2Q9BQY4 288 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 PAAF1Q9BRP4 392 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 PLVAPQ9BX97 442 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 PARD6BQ9BYG5 372 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 EPC1Q9H2F5 836 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 ANKZF1Q9H8Y5 726 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 RBM12Q9NTZ6 932 aaKnown RBP9.4□□□□□ -0.9
CCDC47-207ENST00000612558 ARGLU1Q9NWB6 273 aaPredicted RBP9.4□□□□□ -0.9
CCDC47-207ENST00000612558 TMEM161AQ9NX61 479 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 KANSL3Q9P2N6 904 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 CACNG4Q9UBN1 327 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 TMEM59LQ9UK28 342 aa9.4□□□□□ -0.9
CCDC47-207ENST00000612558 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.4□□□□□ -0.9
CCDC47-207ENST00000612558 ARHGEF37A1IGU5 675 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 TARSL2A2RTX5 802 aaKnown RBP9.39□□□□□ -0.91
CCDC47-207ENST00000612558 HCRTO43612 131 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 GJB6O95452 261 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 FGGP02679 453 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 H2AFXP16104 143 aaPredicted RBP9.39□□□□□ -0.91
CCDC47-207ENST00000612558 PTPN1P18031 435 aaKnown RBP9.39□□□□□ -0.91
CCDC47-207ENST00000612558 IGFBP6P24592 240 aaPredicted RBP9.39□□□□□ -0.91
CCDC47-207ENST00000612558 BCAT1P54687 386 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 BST2Q10589 180 aaKnown RBP9.39□□□□□ -0.91
CCDC47-207ENST00000612558 PKN2Q16513 984 aaKnown RBP9.39□□□□□ -0.91
CCDC47-207ENST00000612558 TIGD5Q53EQ6 642 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 GLE1Q53GS7 698 aaKnown RBP9.39□□□□□ -0.91
CCDC47-207ENST00000612558 NOMO2Q5JPE7 1267 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 CLLU1OSQ5K130 101 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 SEL1L2Q5TEA6 688 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 PMF1Q6P1K2 205 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 TMEM110Q86TL2 294 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 OSTM1Q86WC4 334 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 CPNE8Q86YQ8 564 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 NPAS3Q8IXF0 933 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 DNAJC5GQ8N7S2 189 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 NIPA2Q8N8Q9 360 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 C3orf58Q8NDZ4 430 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 FNIP1Q8TF40 1166 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 HNRNPABQ99729 332 aaKnown RBP9.39□□□□□ -0.91
CCDC47-207ENST00000612558 HIPK3Q9H422 1215 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 ST7Q9NRC1 585 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 TJP2Q9UDY2 1190 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 RAB21Q9UL25 225 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 PCDHB7Q9Y5E2 793 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 TET1Q8NFU7 2136 aa9.39□□□□□ -0.91
CCDC47-207ENST00000612558 GOLGA8SH3BPF8 625 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 CCDC188H7C350 402 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 M0QZQ0 153 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 KRIT1O00522 736 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 PSTPIP1O43586 416 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 CXCL10P02778 98 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 PYGMP11217 842 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 ODC1P11926 461 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 CCDC130P13994 396 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 MCM3P25205 808 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 ADORA2BP29275 332 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 RFC1P35251 1148 aaPredicted RBP9.38□□□□□ -0.91
CCDC47-207ENST00000612558 MARCKSL1P49006 195 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 TLE2Q04725 743 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 PDE4CQ08493 712 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 DSC1Q08554 894 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 FAAP100Q0VG06 881 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 ZNF211Q13398 564 aaPredicted RBP9.38□□□□□ -0.91
CCDC47-207ENST00000612558 LONRF2Q1L5Z9 754 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 LRRC38Q5VT99 294 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 CD300LGQ6UXG3 332 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 METTL23Q86XA0 190 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 ZDHHC17Q8IUH5 632 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 RHOT1Q8IXI2 618 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 SLC2A14Q8TDB8 520 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 ARMC5Q96C12 935 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 LPIN3Q9BQK8 851 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 LRRC1Q9BTT6 524 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 CYLDQ9NQC7 956 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 DDX43Q9NXZ2 648 aaKnown RBP9.38□□□□□ -0.91
CCDC47-207ENST00000612558 DSEQ9UL01 958 aa9.38□□□□□ -0.91
CCDC47-207ENST00000612558 CDH9Q9ULB4 789 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms