RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 RBM12Q9NTZ6 932 aaKnown RBP16.84■□□□□ 0.29
VRK3-221ENST00000600284 TRPM5Q9NZQ8 1165 aa16.84■□□□□ 0.29
VRK3-221ENST00000600284 F8VP50 259 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 HOXA6P31267 233 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 SATB1Q01826 763 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 ENPEPQ07075 957 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 GRSF1Q12849 480 aaKnown RBP eCLIP16.83■□□□□ 0.28
VRK3-221ENST00000600284 USP4Q13107 963 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 KCNB1Q14721 858 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 MTF1Q14872 753 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 ZNF77Q15935 545 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 ZACNQ401N2 412 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 TMEM196Q5HYL7 178 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 WDR44Q5JSH3 913 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 GPR161Q8N6U8 529 aaKnown RBP16.83■□□□□ 0.28
VRK3-221ENST00000600284 ARL14EPQ8N8R7 260 aaPredicted RBP16.83■□□□□ 0.28
VRK3-221ENST00000600284 RIN3Q8TB24 985 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 OSCP1Q8WVF1 389 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 SECISBP2LQ93073 1101 aaKnown RBP16.83■□□□□ 0.28
VRK3-221ENST00000600284 CHAMP1Q96JM3 812 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 SLC22A12Q96S37 553 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 HINFPQ9BQA5 517 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 DPEP3Q9H4B8 488 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 KIF26AQ9ULI4 1882 aaPredicted RBP16.83■□□□□ 0.28
VRK3-221ENST00000600284 ARHGAP26Q9UNA1 814 aa16.83■□□□□ 0.28
VRK3-221ENST00000600284 OBSL1O75147 1896 aa16.82■□□□□ 0.28
VRK3-221ENST00000600284 ATP8B3O60423 1300 aa16.82■□□□□ 0.28
VRK3-221ENST00000600284 C2orf78A6NCI8 922 aa16.82■□□□□ 0.28
VRK3-221ENST00000600284 OTOL1A6NHN0 477 aaPredicted RBP16.82■□□□□ 0.28
VRK3-221ENST00000600284 ZNF202O95125 648 aa16.82■□□□□ 0.28
VRK3-221ENST00000600284 VNN1O95497 513 aa16.82■□□□□ 0.28
VRK3-221ENST00000600284 CNR2P34972 360 aa16.82■□□□□ 0.28
VRK3-221ENST00000600284 USP46P62068 366 aa16.82■□□□□ 0.28
VRK3-221ENST00000600284 DLG4P78352 724 aa16.82■□□□□ 0.28
VRK3-221ENST00000600284 TRIM68Q6AZZ1 485 aa16.82■□□□□ 0.28
VRK3-221ENST00000600284 GUF1Q8N442 669 aaKnown RBP16.82■□□□□ 0.28
VRK3-221ENST00000600284 CPA6Q8N4T0 437 aa16.82■□□□□ 0.28
VRK3-221ENST00000600284 ATP2A3Q93084 1043 aa16.82■□□□□ 0.28
VRK3-221ENST00000600284 B3GNT5Q9BYG0 378 aa16.82■□□□□ 0.28
VRK3-221ENST00000600284 ECT2Q9H8V3 914 aa16.82■□□□□ 0.28
VRK3-221ENST00000600284 DUS2Q9NX74 493 aaKnown RBP16.82■□□□□ 0.28
VRK3-221ENST00000600284 GVINP1Q7Z2Y8 2422 aa16.82■□□□□ 0.28
VRK3-221ENST00000600284 EP300Q09472 2414 aaPredicted RBP16.81■□□□□ 0.28
VRK3-221ENST00000600284 ZNF840PA6NDX5 716 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 ATG13O75143 517 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 RTN3O95197 1032 aaPredicted RBP16.81■□□□□ 0.28
VRK3-221ENST00000600284 PRR29P0C7W0 189 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 RPL13P26373 211 aaKnown RBP16.81■□□□□ 0.28
VRK3-221ENST00000600284 ID4P47928 161 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 IFNAR2P48551 515 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 CDH8P55286 799 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 FOXK2Q01167 660 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 NR1H3Q13133 447 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 CEP135Q66GS9 1140 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 Q6ZS52 159 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 INTS8Q75QN2 995 aaKnown RBP16.81■□□□□ 0.28
VRK3-221ENST00000600284 SV2AQ7L0J3 742 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 NUP93Q8N1F7 819 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 SH3RF2Q8TEC5 729 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 OVCA2Q8WZ82 227 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 SLITRK1Q96PX8 696 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 ZNF518BQ9C0D4 1074 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 SMYD3Q9H7B4 428 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 NCDNQ9UBB6 729 aa16.81■□□□□ 0.28
VRK3-221ENST00000600284 SMG5Q9UPR3 1016 aaKnown RBP16.81■□□□□ 0.28
VRK3-221ENST00000600284 ZNF638Q14966 1978 aaKnown RBP16.8■□□□□ 0.28
VRK3-221ENST00000600284 PTPRDP23468 1912 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 GREB1Q4ZG55 1949 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 K7ESF4 209 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 OLFM2O95897 454 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 ARSAP15289 507 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 DRD1P21728 446 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 NR2F2P24468 414 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 GJA4P35212 333 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 VAMP7P51809 220 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 MCCD1P59942 119 aaPredicted RBP16.8■□□□□ 0.28
VRK3-221ENST00000600284 SLC7A9P82251 487 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 BECN1Q14457 450 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 EML3Q32P44 896 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 FBXO43Q4G163 708 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 FSTL4Q6MZW2 842 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 LONP2Q86WA8 852 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 UNC93AQ86WB7 457 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 KIAA2013Q8IYS2 634 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 CRYBG2Q8N1P7 616 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 PDZD8Q8NEN9 1154 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 CHFRQ96EP1 664 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 GOLPH3LQ9H4A5 285 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 COMMD8Q9NX08 183 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 OTOGLQ3ZCN5 2332 aa16.8■□□□□ 0.28
VRK3-221ENST00000600284 CHURC1-FNTBB4DL54 471 aa16.79■□□□□ 0.28
VRK3-221ENST00000600284 CLDN5O00501 218 aa16.79■□□□□ 0.28
VRK3-221ENST00000600284 AKAP3O75969 853 aa16.79■□□□□ 0.28
VRK3-221ENST00000600284 CLSTN1O94985 981 aa16.79■□□□□ 0.28
VRK3-221ENST00000600284 ASS1P00966 412 aaKnown RBP16.79■□□□□ 0.28
VRK3-221ENST00000600284 OAS1P00973 400 aaKnown RBP16.79■□□□□ 0.28
VRK3-221ENST00000600284 TRIM21P19474 475 aaKnown RBP16.79■□□□□ 0.28
VRK3-221ENST00000600284 YWHAQP27348 245 aa16.79■□□□□ 0.28
VRK3-221ENST00000600284 GALK1P51570 392 aa16.79■□□□□ 0.28
VRK3-221ENST00000600284 CACNA2D1P54289 1103 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms