RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 SMARCD2Q92925 531 aa13.52□□□□□ -0.25
UPF1-208ENST00000600012 IQCDQ96DY2 449 aa13.52□□□□□ -0.25
UPF1-208ENST00000600012 ANKRD36BP1Q96IX9 119 aa13.52□□□□□ -0.25
UPF1-208ENST00000600012 IER2Q9BTL4 223 aa13.52□□□□□ -0.25
UPF1-208ENST00000600012 PI4K2AQ9BTU6 479 aa13.52□□□□□ -0.25
UPF1-208ENST00000600012 EPC1Q9H2F5 836 aa13.52□□□□□ -0.25
UPF1-208ENST00000600012 TRPV5Q9NQA5 729 aa13.52□□□□□ -0.25
UPF1-208ENST00000600012 ASAH2Q9NR71 780 aa13.52□□□□□ -0.25
UPF1-208ENST00000600012 ABHD10Q9NUJ1 306 aa13.52□□□□□ -0.25
UPF1-208ENST00000600012 RAB20Q9NX57 234 aa13.52□□□□□ -0.25
UPF1-208ENST00000600012 CEP72Q9P209 647 aa13.52□□□□□ -0.25
UPF1-208ENST00000600012 SMG5Q9UPR3 1016 aaKnown RBP13.52□□□□□ -0.25
UPF1-208ENST00000600012 LUC7L2Q9Y383 392 aaKnown RBP13.52□□□□□ -0.25
UPF1-208ENST00000600012 COQ4Q9Y3A0 265 aa13.52□□□□□ -0.25
UPF1-208ENST00000600012 MED19A0JLT2 244 aaPredicted RBP13.51□□□□□ -0.25
UPF1-208ENST00000600012 SHISA7A6NL88 538 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 CLSTN1O94985 981 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 TNNC2P02585 160 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 MYL4P12829 197 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 UCHL3P15374 230 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 PSMC3P17980 439 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 GUCY2FP51841 1108 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 AP3M2P53677 418 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 ZBED6P86452 979 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 CCZ1BP86790 482 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 CCZ1P86791 482 aaPredicted RBP13.51□□□□□ -0.25
UPF1-208ENST00000600012 YWHAHQ04917 246 aaPredicted RBP13.51□□□□□ -0.25
UPF1-208ENST00000600012 TWF1Q12792 350 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 MTAPQ13126 283 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 DUOXA2Q1HG44 320 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 E4F1Q66K89 784 aaPredicted RBP13.51□□□□□ -0.25
UPF1-208ENST00000600012 VITQ6UXI7 678 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 RRAGAQ7L523 313 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 CD302Q8IX05 232 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 HS6ST3Q8IZP7 471 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 BEST2Q8NFU1 509 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 KIF12Q96FN5 646 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 OXCT2Q9BYC2 517 aaPredicted RBP13.51□□□□□ -0.25
UPF1-208ENST00000600012 CHRDQ9H2X0 955 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 ASB7Q9H672 318 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 PLEKHA5Q9HAU0 1116 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 ZNF334Q9HCZ1 680 aaPredicted RBP13.51□□□□□ -0.25
UPF1-208ENST00000600012 TUBGCP4Q9UGJ1 667 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 DNAJC12Q9UKB3 198 aa13.51□□□□□ -0.25
UPF1-208ENST00000600012 NDRG2Q9UN36 371 aaKnown RBP13.51□□□□□ -0.25
UPF1-208ENST00000600012 LRRC53A6NM62 1247 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 M0QZQ0 153 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 MOSPD3O75425 235 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 OAZ2O95190 189 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 SDHBP21912 280 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 LRPAP1P30533 357 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 GDI1P31150 447 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 PLD1Q13393 1074 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 NCOA4Q13772 614 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 RAPGEF1Q13905 1077 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 PPP2R5DQ14738 602 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 SPOPLQ6IQ16 392 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 TSSK4Q6SA08 328 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 RNF19BQ6ZMZ0 732 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 MAMSTRQ6ZN01 415 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 TMEM139Q8IV31 216 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 ZNF687Q8N1G0 1237 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 ZSCAN18Q8TBC5 510 aaPredicted RBP13.5□□□□□ -0.25
UPF1-208ENST00000600012 FAM3CQ92520 227 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 KAT5Q92993 513 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 E2F7Q96AV8 911 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 ZSWIM3Q96MP5 696 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 NT5C1BQ96P26 610 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 PANX2Q96RD6 677 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 EDEM3Q9BZQ6 932 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 GPR88Q9GZN0 384 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 TRPV4Q9HBA0 871 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 APEX2Q9UBZ4 518 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 UBQLN1Q9UMX0 589 aaKnown RBP13.5□□□□□ -0.25
UPF1-208ENST00000600012 YIPF1Q9Y548 306 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 NCOR2Q9Y618 2525 aa13.5□□□□□ -0.25
UPF1-208ENST00000600012 NUP210Q8TEM1 1887 aaPredicted RBP13.49□□□□□ -0.25
UPF1-208ENST00000600012 NRG2O14511 850 aaPredicted RBP13.49□□□□□ -0.25
UPF1-208ENST00000600012 ZNF263O14978 683 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 XPOTO43592 962 aaKnown RBP13.49□□□□□ -0.25
UPF1-208ENST00000600012 CST3P01034 146 aaPredicted RBP13.49□□□□□ -0.25
UPF1-208ENST00000600012 ITGB3P05106 788 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 KRT19P08727 400 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 PNMA6AP0CW24 399 aaPredicted RBP13.49□□□□□ -0.25
UPF1-208ENST00000600012 CYP3A5P20815 502 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 AARSP49588 968 aaKnown RBP eCLIP13.49□□□□□ -0.254e-6■■■■□ 24
UPF1-208ENST00000600012 NRLP54845 237 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 MYL6P60660 151 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 ARHGAP44Q17R89 818 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 RSPO4Q2I0M5 234 aaPredicted RBP13.49□□□□□ -0.25
UPF1-208ENST00000600012 HS1BP3Q53T59 392 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 MFSD6LQ8IWD5 586 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 PPM1KQ8N3J5 372 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 C1orf127Q8N9H9 656 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 ZNF397Q8NF99 534 aaPredicted RBP13.49□□□□□ -0.25
UPF1-208ENST00000600012 OR8K1Q8NGG5 319 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 TATDN2Q93075 761 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 SPAG5Q96R06 1193 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 DNAJC7Q99615 494 aa13.49□□□□□ -0.25
UPF1-208ENST00000600012 NAA15Q9BXJ9 866 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms