RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 GRASPQ7Z6J2 395 aaPredicted RBP17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 NUP93Q8N1F7 819 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 ZNF397Q8NF99 534 aaPredicted RBP17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 STK32AQ8WU08 396 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 ZNF606Q8WXB4 792 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 OVCA2Q8WZ82 227 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 LPIN3Q9BQK8 851 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 XPO4Q9C0E2 1151 aaKnown RBP17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 RBSNQ9H1K0 784 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 FBXO44Q9H4M3 255 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 IL37Q9NZH6 218 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 PCDHGC3Q9UN70 934 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 NR2E1Q9Y466 385 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 NCANO14594 1321 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 SLC38A8A6NNN8 435 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 XPO1O14980 1071 aaKnown RBP17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 CYP26A1O43174 497 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 HMGA1P17096 107 aaKnown RBP17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 CLCN1P35523 988 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 PKDCCQ504Y2 493 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 GAS2L3Q86XJ1 694 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 PDZD8Q8NEN9 1154 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 TFAP2BQ92481 460 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 ACSF2Q96CM8 615 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 GCNAQ96QF7 691 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 SMOQ99835 787 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 CORO1BQ9BR76 489 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 APOL5Q9BWW9 433 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 LRRC3Q9BY71 257 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 LHX5Q9H2C1 402 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 NLRC4Q9NPP4 1024 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 PRDM6Q9NQX0 595 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 GDE1Q9NZC3 331 aa17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 AJAP1Q9UKB5 411 aaPredicted RBP17.51■□□□□ 0.39
SHKBP1-219ENST00000599575 SPTBN5Q9NRC6 3674 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 FAM92AA1XBS5 289 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 TNFRSF10BO14763 440 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 EPHB6O15197 1021 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 THAP12O43422 761 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 SOAT2O75908 522 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 CYP11B1P15538 503 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 FERP16591 822 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 PFKLP17858 780 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 FSHRP23945 695 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 DDX6P26196 483 aaKnown RBP eCLIP17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 KRT9P35527 623 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 PLA2G4AP47712 749 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 PDE6CP51160 858 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 MAP3K7CLP57077 242 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 GOLGA7BQ2TAP0 167 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 SPECC1LQ69YQ0 1117 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 TMC8Q8IU68 726 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 PLCD3Q8N3E9 789 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 ZMIZ2Q8NF64 920 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 GIPC2Q8TF65 315 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 KCTD13Q8WZ19 329 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 HSFY1Q96LI6 401 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 SLITRK1Q96PX8 696 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 KCNK16Q96T55 309 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 TTYH3Q9C0H2 523 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 POMKQ9H5K3 350 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 CYLDQ9NQC7 956 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 MRPS23Q9Y3D9 190 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 CEP83Q9Y592 693 aa17.5■□□□□ 0.39
SHKBP1-219ENST00000599575 BMP1P13497 986 aa17.49■□□□□ 0.39
SHKBP1-219ENST00000599575 BRD2P25440 801 aaKnown RBP17.49■□□□□ 0.39
SHKBP1-219ENST00000599575 CACNA2D1P54289 1103 aa17.49■□□□□ 0.39
SHKBP1-219ENST00000599575 SNX16P57768 344 aa17.49■□□□□ 0.39
SHKBP1-219ENST00000599575 PRSS36Q5K4E3 855 aa17.49■□□□□ 0.39
SHKBP1-219ENST00000599575 TTC30AQ86WT1 665 aa17.49■□□□□ 0.39
SHKBP1-219ENST00000599575 SCML4Q8N228 414 aa17.49■□□□□ 0.39
SHKBP1-219ENST00000599575 SLC35F5Q8WV83 523 aa17.49■□□□□ 0.39
SHKBP1-219ENST00000599575 SYN2Q92777 582 aaPredicted RBP17.49■□□□□ 0.39
SHKBP1-219ENST00000599575 NOX5Q96PH1 765 aa17.49■□□□□ 0.39
SHKBP1-219ENST00000599575 TRIM5Q9C035 493 aa17.49■□□□□ 0.39
SHKBP1-219ENST00000599575 TMEM30AQ9NV96 361 aa17.49■□□□□ 0.39
SHKBP1-219ENST00000599575 M0QYV0 167 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 SLC34A2O95436 690 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 LSM8O95777 96 aaKnown RBP17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 TPM1P09493 284 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 YWHAQP27348 245 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 WEE1P30291 646 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 GPR15P49685 360 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 PSEN1P49768 467 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 KIF11P52732 1056 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 SLC5A3P53794 718 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 ZBED6P86452 979 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 PDE4CQ08493 712 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 ARHGAP15Q53QZ3 475 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 RAB41Q5JT25 222 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 TJAP1Q5JTD0 557 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 SLC47A2Q86VL8 602 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 VSTM4Q8IW00 320 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 ADHFE1Q8IWW8 467 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 EPS8L1Q8TE68 723 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 BAP1Q92560 729 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 MRFAP1L1Q96HT8 127 aa17.48■□□□□ 0.39
SHKBP1-219ENST00000599575 ZSWIM1Q9BR11 485 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms