RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 SYT15Q9BQS2 421 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 KCTD10Q9H3F6 313 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 ABCB6Q9NP58 842 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 CRTAC1Q9NQ79 661 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 DUS2Q9NX74 493 aaKnown RBP13.35□□□□□ -0.27
UPF1-203ENST00000594504 MAGEC2Q9UBF1 373 aaPredicted RBP13.35□□□□□ -0.27
UPF1-203ENST00000594504 NME7Q9Y5B8 376 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 WNT6Q9Y6F9 365 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 GREB1Q4ZG55 1949 aa13.35□□□□□ -0.27
UPF1-203ENST00000594504 ZNF233A6NK53 670 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 PDXKO00764 312 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 CLIC2O15247 247 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 TNNC2P02585 160 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 BDNFP23560 247 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 USP46P62068 366 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 ZXDBP98169 803 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 ZNF268Q14587 947 aaPredicted RBP13.34□□□□□ -0.27
UPF1-203ENST00000594504 MTF1Q14872 753 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 ZNF77Q15935 545 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 CSRP2Q16527 193 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 LIMS2Q7Z4I7 341 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 XXYLT1Q8NBI6 393 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 TMEM174Q8WUU8 243 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 MYLPFQ96A32 169 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 TRMT2BQ96GJ1 504 aaKnown RBP13.34□□□□□ -0.27
UPF1-203ENST00000594504 CNTNAP3BQ96NU0 1288 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 P2RY13Q9BPV8 354 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 MRPL45Q9BRJ2 306 aaKnown RBP13.34□□□□□ -0.27
UPF1-203ENST00000594504 CNTNAP3Q9BZ76 1288 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 ARRDC1-AS1Q9H2J1 176 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 ECT2Q9H8V3 914 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 KIF9Q9HAQ2 790 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 GCNT4Q9P109 453 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 UXTQ9UBK9 157 aaPredicted RBP13.34□□□□□ -0.27
UPF1-203ENST00000594504 ZMYM5Q9UJ78 669 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 SLC8A2Q9UPR5 921 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 EML5Q05BV3 1969 aa13.34□□□□□ -0.27
UPF1-203ENST00000594504 GVINP1Q7Z2Y8 2422 aa13.33□□□□□ -0.27
UPF1-203ENST00000594504 SOBPA7XYQ1 873 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 GOLGA6L22H0YM25 854 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 USP17L7P0C7H9 530 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 HDCP19113 662 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 PCSK1P29120 753 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 HOXA6P31267 233 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 GRIK1P39086 918 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 CYP2J2P51589 502 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 CYP27A1Q02318 531 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 MYO1EQ12965 1108 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 PDGFRLQ15198 375 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 SF3A2Q15428 464 aaKnown RBP13.33□□□□□ -0.28
UPF1-203ENST00000594504 SNRNP35Q16560 246 aaKnown RBP13.33□□□□□ -0.28
UPF1-203ENST00000594504 DUOXA2Q1HG44 320 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 CFAP221Q4G0U5 840 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 COBLL1Q53SF7 1204 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 ZNF658Q5TYW1 1059 aaPredicted RBP13.33□□□□□ -0.28
UPF1-203ENST00000594504 DPH6Q7L8W6 267 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 TRAPPC11Q7Z392 1133 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 KBTBD6Q86V97 674 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 SLC9A9Q8IVB4 645 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 SH3RF2Q8TEC5 729 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 OSCP1Q8WVF1 389 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 ZNF516Q92618 1163 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 ERCC4Q92889 916 aaPredicted RBP13.33□□□□□ -0.28
UPF1-203ENST00000594504 HHIPQ96QV1 700 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 MMS19Q96T76 1030 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 LMBRD1Q9NUN5 540 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 CDH9Q9ULB4 789 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 TRAF3IP3Q9Y228 551 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 R3HCC1Q9Y3T6 440 aaKnown RBP13.33□□□□□ -0.28
UPF1-203ENST00000594504 GPR179Q6PRD1 2367 aa13.33□□□□□ -0.28
UPF1-203ENST00000594504 SPTBN4Q9H254 2564 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 TRAV19A0A0A6YYK7 116 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 SLC30A4O14863 429 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 CALUO43852 315 aaPredicted RBP13.32□□□□□ -0.28
UPF1-203ENST00000594504 EXOC3O60645 756 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 ATG13O75143 517 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 RPP40O75818 363 aaKnown RBP13.32□□□□□ -0.28
UPF1-203ENST00000594504 CKMP06732 381 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 CCDC192P0DO97 292 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 DLATP10515 647 aaKnown RBP13.32□□□□□ -0.28
UPF1-203ENST00000594504 TNNI1P19237 187 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 WARSP23381 471 aaKnown RBP13.32□□□□□ -0.28
UPF1-203ENST00000594504 IFNAR2P48551 515 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 USP4Q13107 963 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 SURF1Q15526 300 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 EML3Q32P44 896 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 C4orf50Q6ZRC1 276 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 SMYD4Q8IYR2 804 aaPredicted RBP13.32□□□□□ -0.28
UPF1-203ENST00000594504 RPLP0P6Q8NHW5 317 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 SPATA18Q8TC71 538 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 NETO1Q8TDF5 533 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 GAB3Q8WWW8 586 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 CD101Q93033 1021 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 ELMO3Q96BJ8 720 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 PCED1BQ96HM7 432 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 FUBP3Q96I24 572 aaKnown RBP eCLIP13.32□□□□□ -0.28
UPF1-203ENST00000594504 RNF38Q9H0F5 515 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 SMOC1Q9H4F8 434 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 RXFP3Q9NSD7 469 aa13.32□□□□□ -0.28
UPF1-203ENST00000594504 DMAC2Q9NW81 257 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms