RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 KBTBD7Q8WVZ9 684 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 ZNF516Q92618 1163 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 SMARCE1Q969G3 411 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 PI4K2AQ9BTU6 479 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 TDP1Q9NUW8 608 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 NDRG2Q9UN36 371 aaKnown RBP11.19□□□□□ -0.62
LIG3-212ENST00000590181 FAM208BQ5VWN6 2430 aa11.19□□□□□ -0.62
LIG3-212ENST00000590181 KIF26AQ9ULI4 1882 aaPredicted RBP11.19□□□□□ -0.62
LIG3-212ENST00000590181 CACNA1GO43497 2377 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 PTPRJQ12913 1337 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 PTPRDP23468 1912 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 LRRIQ3A6PVS8 624 aaPredicted RBP11.18□□□□□ -0.62
LIG3-212ENST00000590181 HEPACAM2A8MVW5 462 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 A8MXQ7 604 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 PSMA7O14818 248 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 SLC16A3O15427 465 aaKnown RBP11.18□□□□□ -0.62
LIG3-212ENST00000590181 RTN3O95197 1032 aaPredicted RBP11.18□□□□□ -0.62
LIG3-212ENST00000590181 USP17L7P0C7H9 530 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 TDGF1P13385 188 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 KCNA4P22459 653 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 TGM1P22735 817 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 CYP2F1P24903 491 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 GRIK1P39086 918 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 MYL6P60660 151 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 GRM2Q14416 872 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 DGKKQ5KSL6 1271 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 CEP135Q66GS9 1140 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 CC2D1AQ6P1N0 951 aaPredicted RBP11.18□□□□□ -0.62
LIG3-212ENST00000590181 VITQ6UXI7 678 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 PRR23BQ6ZRT6 265 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 DENND5BQ6ZUT9 1274 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 SV2AQ7L0J3 742 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 FAM186BQ8IYM0 893 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 CRYBG2Q8N1P7 616 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 B3GALNT2Q8NCR0 500 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 BPIFB1Q8TDL5 484 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 DHTKD1Q96HY7 919 aaPredicted RBP11.18□□□□□ -0.62
LIG3-212ENST00000590181 ZSWIM3Q96MP5 696 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 TTLL2Q9BWV7 592 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 CHRDQ9H2X0 955 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 IL21Q9HBE4 155 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 METTL14Q9HCE5 456 aaKnown RBP11.18□□□□□ -0.62
LIG3-212ENST00000590181 SPAG17Q6Q759 2223 aa11.18□□□□□ -0.62
LIG3-212ENST00000590181 CNOT1A5YKK6 2376 aaKnown RBP11.18□□□□□ -0.62
LIG3-212ENST00000590181 NCANO14594 1321 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 TRAV19A0A0A6YYK7 116 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 BICDL2A1A5D9 508 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 MYBPHLA2RUH7 354 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 SLC38A8A6NNN8 435 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 SLC30A4O14863 429 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 ASS1P00966 412 aaKnown RBP11.17□□□□□ -0.62
LIG3-212ENST00000590181 EPB41P11171 864 aaKnown RBP11.17□□□□□ -0.62
LIG3-212ENST00000590181 LMO2P25791 158 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 GDI1P31150 447 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 NRLP54845 237 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 NR1H3Q13133 447 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 LRRC32Q14392 662 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 PDGFRLQ15198 375 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 ZCWPW2Q504Y3 356 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 TDRD10Q5VZ19 366 aaKnown RBP11.17□□□□□ -0.62
LIG3-212ENST00000590181 LMBRD2Q68DH5 695 aaPredicted RBP11.17□□□□□ -0.62
LIG3-212ENST00000590181 KRT39Q6A163 491 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 DDX42Q86XP3 938 aaKnown RBP eCLIP11.17□□□□□ -0.62
LIG3-212ENST00000590181 STKLD1Q8NE28 680 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 SLITRK1Q96PX8 696 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 LPIN3Q9BQK8 851 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 SLC46A2Q9BY10 475 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 PLA2G2FQ9BZM2 168 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 GZF1Q9H116 711 aaPredicted RBP11.17□□□□□ -0.62
LIG3-212ENST00000590181 GOLPH3LQ9H4A5 285 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 TMEM8AQ9HCN3 771 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 TRPM5Q9NZQ8 1165 aa11.17□□□□□ -0.62
LIG3-212ENST00000590181 NXF1Q9UBU9 619 aaKnown RBP11.17□□□□□ -0.62
LIG3-212ENST00000590181 ZZEF1O43149 2961 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 LAMA1P25391 3075 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 MYH10P35580 1976 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 ANAPC1Q9H1A4 1944 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.16□□□□□ -0.62
LIG3-212ENST00000590181 SHISA7A6NL88 538 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 ARNTLO00327 626 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 SLC9A3R1O14745 358 aaPredicted RBP11.16□□□□□ -0.62
LIG3-212ENST00000590181 PMM2O15305 246 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 FGFR1OPO95684 399 aaKnown RBP11.16□□□□□ -0.62
LIG3-212ENST00000590181 PDGFRBP09619 1106 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 ACAT1P24752 427 aaKnown RBP11.16□□□□□ -0.62
LIG3-212ENST00000590181 VIPR2P41587 438 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 TUBP50607 506 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 CCR3P51677 355 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 CYP27A1Q02318 531 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 CETN1Q12798 172 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 DDR2Q16832 855 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 ITPRIPL2Q3MIP1 535 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 WDR44Q5JSH3 913 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.16□□□□□ -0.62
LIG3-212ENST00000590181 OSTM1Q86WC4 334 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 SCN4BQ8IWT1 228 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 TTC9BQ8N6N2 239 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 TRIML1Q8N9V2 468 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 FBXL13Q8NEE6 735 aa11.16□□□□□ -0.62
LIG3-212ENST00000590181 GIPC2Q8TF65 315 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms