RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 GOLPH3Q9H4A6 298 aa23.47■■□□□ 1.35
ATG4D-209ENST00000588857 PIK3R2O00459 728 aa23.46■■□□□ 1.35
ATG4D-209ENST00000588857 USP41Q3LFD5 358 aa23.46■■□□□ 1.35
ATG4D-209ENST00000588857 MEI1Q5TIA1 1274 aa23.46■■□□□ 1.35
ATG4D-209ENST00000588857 OR6B2Q6IFH4 312 aa23.46■■□□□ 1.35
ATG4D-209ENST00000588857 CLEC20AQ6ZU45 233 aa23.46■■□□□ 1.35
ATG4D-209ENST00000588857 SPATA2LQ8IUW3 424 aaPredicted RBP23.46■■□□□ 1.35
ATG4D-209ENST00000588857 SLC39A11Q8N1S5 342 aa23.46■■□□□ 1.35
ATG4D-209ENST00000588857 FIBCD1Q8N539 461 aa23.46■■□□□ 1.35
ATG4D-209ENST00000588857 OXCT2Q9BYC2 517 aaPredicted RBP23.46■■□□□ 1.35
ATG4D-209ENST00000588857 TMLHEQ9NVH6 421 aa23.46■■□□□ 1.35
ATG4D-209ENST00000588857 SPG21Q9NZD8 308 aa23.46■■□□□ 1.35
ATG4D-209ENST00000588857 AMFRQ9UKV5 643 aa23.46■■□□□ 1.35
ATG4D-209ENST00000588857 TCRBV5S1A1TA0A578 114 aa23.45■■□□□ 1.34
ATG4D-209ENST00000588857 KRT3P12035 628 aa23.45■■□□□ 1.34
ATG4D-209ENST00000588857 MAP3K7CLP57077 242 aa23.45■■□□□ 1.34
ATG4D-209ENST00000588857 SLC39A12Q504Y0 691 aa23.45■■□□□ 1.34
ATG4D-209ENST00000588857 RTP2Q5QGT7 225 aa23.45■■□□□ 1.34
ATG4D-209ENST00000588857 PAPD7Q5XG87 772 aaKnown RBP23.45■■□□□ 1.34
ATG4D-209ENST00000588857 FAM109BQ6ICB4 259 aaPredicted RBP23.45■■□□□ 1.34
ATG4D-209ENST00000588857 TAS1R1Q7RTX1 841 aa23.45■■□□□ 1.34
ATG4D-209ENST00000588857 ZDHHC17Q8IUH5 632 aa23.45■■□□□ 1.34
ATG4D-209ENST00000588857 HERC6Q8IVU3 1022 aa23.45■■□□□ 1.34
ATG4D-209ENST00000588857 MCRS1Q96EZ8 462 aa23.45■■□□□ 1.34
ATG4D-209ENST00000588857 BTBD6Q96KE9 485 aa23.45■■□□□ 1.34
ATG4D-209ENST00000588857 LCMT1Q9UIC8 334 aa23.45■■□□□ 1.34
ATG4D-209ENST00000588857 SIGLEC16A6NMB1 481 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 NCK2O43639 380 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 EFEMP2O95967 443 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 OR4Q2P0C623 313 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 ATP2A2P16615 1042 aaKnown RBP23.44■■□□□ 1.34
ATG4D-209ENST00000588857 PPM1AP35813 382 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 NFE2Q16621 373 aaPredicted RBP23.44■■□□□ 1.34
ATG4D-209ENST00000588857 KIAA1841Q6NSI8 718 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 PIGZQ86VD9 579 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 DEFB123Q8N688 67 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 MCEEQ96PE7 176 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 PCDHB12Q9Y5F1 795 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 ALG6Q9Y672 507 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 SAR1BQ9Y6B6 198 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 TMEM191CA6NGB0 347 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 BEST1O76090 585 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 GJB6O95452 261 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 BDNFP23560 247 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 RPL34P49207 117 aaKnown RBP23.44■■□□□ 1.34
ATG4D-209ENST00000588857 TUBB2AQ13885 445 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 RPS6KA1Q15418 735 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 PTPROQ16827 1216 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 PPP1R15BQ5SWA1 713 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 FAM102AQ5T9C2 384 aaPredicted RBP23.44■■□□□ 1.34
ATG4D-209ENST00000588857 FAM183BPQ6ZVS7 135 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 Q7L0L9 218 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 NT5DC3Q86UY8 548 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 SCUBE3Q8IX30 993 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 KCTD13Q8WZ19 329 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 RAD9AQ99638 391 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 SMOQ99835 787 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 TUBB2BQ9BVA1 445 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 TLR10Q9BXR5 811 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 UBXN6Q9BZV1 441 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 LRRC4Q9HBW1 653 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 ABCB6Q9NP58 842 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 IP6K2Q9UHH9 426 aa23.44■■□□□ 1.34
ATG4D-209ENST00000588857 LCP1P13796 627 aa23.43■■□□□ 1.34
ATG4D-209ENST00000588857 RPL7AP62424 266 aaKnown RBP23.43■■□□□ 1.34
ATG4D-209ENST00000588857 RNF168Q8IYW5 571 aaPredicted RBP23.43■■□□□ 1.34
ATG4D-209ENST00000588857 UBE2Q2Q8WVN8 375 aa23.43■■□□□ 1.34
ATG4D-209ENST00000588857 RIN2Q8WYP3 895 aaPredicted RBP23.43■■□□□ 1.34
ATG4D-209ENST00000588857 VN1R3Q9BXE9 311 aa23.43■■□□□ 1.34
ATG4D-209ENST00000588857 RHOBTB2Q9BYZ6 727 aa23.43■■□□□ 1.34
ATG4D-209ENST00000588857 TRIM7Q9C029 511 aa23.43■■□□□ 1.34
ATG4D-209ENST00000588857 CSNK1G1Q9HCP0 422 aa23.43■■□□□ 1.34
ATG4D-209ENST00000588857 METTL5Q9NRN9 209 aaKnown RBP23.43■■□□□ 1.34
ATG4D-209ENST00000588857 SNX12Q9UMY4 172 aa23.43■■□□□ 1.34
ATG4D-209ENST00000588857 PACSIN2Q9UNF0 486 aaPredicted RBP23.43■■□□□ 1.34
ATG4D-209ENST00000588857 HYOU1Q9Y4L1 999 aa23.43■■□□□ 1.34
ATG4D-209ENST00000588857 TLL1O43897 1013 aa23.42■■□□□ 1.34
ATG4D-209ENST00000588857 SOD2P04179 222 aa23.42■■□□□ 1.34
ATG4D-209ENST00000588857 COMTP21964 271 aa23.42■■□□□ 1.34
ATG4D-209ENST00000588857 ARPP19P56211 112 aa23.42■■□□□ 1.34
ATG4D-209ENST00000588857 SLC6A3Q01959 620 aa23.42■■□□□ 1.34
ATG4D-209ENST00000588857 KCNK16Q96T55 309 aa23.42■■□□□ 1.34
ATG4D-209ENST00000588857 DMAP1Q9NPF5 467 aaPredicted RBP23.42■■□□□ 1.34
ATG4D-209ENST00000588857 GRXCR1A8MXD5 290 aa23.41■■□□□ 1.34
ATG4D-209ENST00000588857 PAPSS1O43252 624 aaPredicted RBP23.41■■□□□ 1.34
ATG4D-209ENST00000588857 SPOPO43791 374 aa23.41■■□□□ 1.34
ATG4D-209ENST00000588857 GABBR2O75899 941 aa23.41■■□□□ 1.34
ATG4D-209ENST00000588857 PROSCO94903 275 aa23.41■■□□□ 1.34
ATG4D-209ENST00000588857 CPB1P15086 417 aa23.41■■□□□ 1.34
ATG4D-209ENST00000588857 PRLRP16471 622 aa23.41■■□□□ 1.34
ATG4D-209ENST00000588857 RFC1P35251 1148 aaPredicted RBP23.41■■□□□ 1.34
ATG4D-209ENST00000588857 SLC1A1P43005 524 aa23.41■■□□□ 1.34
ATG4D-209ENST00000588857 DNA2P51530 1060 aa23.41■■□□□ 1.34
ATG4D-209ENST00000588857 AMPD2Q01433 879 aa23.41■■□□□ 1.34
ATG4D-209ENST00000588857 PRSS55Q6UWB4 352 aaPredicted RBP23.41■■□□□ 1.34
ATG4D-209ENST00000588857 DDX53Q86TM3 631 aaKnown RBP23.41■■□□□ 1.34
ATG4D-209ENST00000588857 SIX6OS1Q8N1H7 587 aa23.41■■□□□ 1.34
ATG4D-209ENST00000588857 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.41■■□□□ 1.34
ATG4D-209ENST00000588857 FUBP3Q96I24 572 aaKnown RBP eCLIP23.41■■□□□ 1.34
ATG4D-209ENST00000588857 CHST7Q9NS84 486 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms