RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 CYFIP2Q96F07 1278 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 BCO2Q9BYV7 579 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 CLSTN2Q9H4D0 955 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 FBXO44Q9H4M3 255 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 KIF9Q9HAQ2 790 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 HEBP1Q9NRV9 189 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 KRT82Q9NSB4 513 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 FAM49BQ9NUQ9 324 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 OBP2AQ9NY56 170 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 RWDD2AQ9UIY3 292 aa11.55□□□□□ -0.56
CLIP3-203ENST00000586457 DOCK6Q96HP0 2047 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 CCDC130P13994 396 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 GLULP15104 373 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 FCARP24071 287 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 WEE1P30291 646 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 FMO5P49326 533 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 VCPP55072 806 aaKnown RBP11.54□□□□□ -0.56
CLIP3-203ENST00000586457 MAP3K7CLP57077 242 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 STARD6P59095 220 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 TAF10Q12962 218 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 TTI2Q6NXR4 508 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 FOXR2Q6PJQ5 311 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 FAM35AQ86V20 835 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 FAM114A1Q8IWE2 563 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 C12orf29Q8N999 325 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 ATOH1Q92858 354 aaPredicted RBP11.54□□□□□ -0.56
CLIP3-203ENST00000586457 FBXO32Q969P5 355 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 JAKMIP2Q96AA8 810 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 TMEM176AQ96HP8 235 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 NT5C1BQ96P26 610 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 KCNK16Q96T55 309 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 SMG9Q9H0W8 520 aaKnown RBP11.54□□□□□ -0.56
CLIP3-203ENST00000586457 SDCBP2Q9H190 292 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 FAM124BQ9H5Z6 455 aaPredicted RBP11.54□□□□□ -0.56
CLIP3-203ENST00000586457 IL21Q9HBE4 155 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 CISHQ9NSE2 258 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 COMMD8Q9NX08 183 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 PIAS3Q9Y6X2 628 aa11.54□□□□□ -0.56
CLIP3-203ENST00000586457 P4HA2O15460 535 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 GALR2O43603 387 aaPredicted RBP11.53□□□□□ -0.56
CLIP3-203ENST00000586457 AFPP02771 609 aaKnown RBP11.53□□□□□ -0.56
CLIP3-203ENST00000586457 DCNP07585 359 aaKnown RBP11.53□□□□□ -0.56
CLIP3-203ENST00000586457 CD19P15391 556 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 PFKLP17858 780 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 CD72P21854 359 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 BMP6P22004 513 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 MTIF2P46199 727 aaKnown RBP11.53□□□□□ -0.56
CLIP3-203ENST00000586457 INCA1Q0VD86 236 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 KCNH2Q12809 1159 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 NR1H3Q13133 447 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 CUL2Q13617 745 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 CBWD6Q4V339 395 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 CBWD3Q5JTY5 395 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 CBWD5Q5RIA9 395 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 IER5LQ5T953 404 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 ZC3H3Q8IXZ2 948 aaKnown RBP11.53□□□□□ -0.56
CLIP3-203ENST00000586457 ARL14EPQ8N8R7 260 aaPredicted RBP11.53□□□□□ -0.56
CLIP3-203ENST00000586457 TMEM105Q8N8V8 129 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 DTWD2Q8NBA8 298 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 TTC8Q8TAM2 541 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 FAM3CQ92520 227 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 SEMA4DQ92854 862 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 TATDN2Q93075 761 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 SLC35C1Q96A29 364 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 MSANTD3Q96H12 275 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 CYP2S1Q96SQ9 504 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 HNRNPABQ99729 332 aaKnown RBP11.53□□□□□ -0.56
CLIP3-203ENST00000586457 DUSP9Q99956 384 aaKnown RBP11.53□□□□□ -0.56
CLIP3-203ENST00000586457 C8orf33Q9H7E9 229 aaPredicted RBP11.53□□□□□ -0.56
CLIP3-203ENST00000586457 APOBEC3GQ9HC16 384 aaKnown RBP11.53□□□□□ -0.56
CLIP3-203ENST00000586457 TRPV5Q9NQA5 729 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 GKN1Q9NS71 199 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 HESX1Q9UBX0 185 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 CHORDC1Q9UHD1 332 aaPredicted RBP11.53□□□□□ -0.56
CLIP3-203ENST00000586457 NDRG2Q9UN36 371 aaKnown RBP11.53□□□□□ -0.56
CLIP3-203ENST00000586457 TRIOO75962 3097 aa11.53□□□□□ -0.56
CLIP3-203ENST00000586457 NOTCH4Q99466 2003 aa11.52□□□□□ -0.56
CLIP3-203ENST00000586457 DOCK8Q8NF50 2099 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 PES1O00541 588 aaKnown RBP11.52□□□□□ -0.57
CLIP3-203ENST00000586457 PI15O43692 258 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 CILPO75339 1184 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 TPM2P07951 284 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 MBL2P11226 248 aaPredicted RBP11.52□□□□□ -0.57
CLIP3-203ENST00000586457 NPR3P17342 541 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 IFNAR2P48551 515 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 FCHO2Q0JRZ9 810 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 PPP2R5DQ14738 602 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 PDGFRLQ15198 375 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 ITPRIPL2Q3MIP1 535 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 HECTD3Q5T447 861 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 SASS6Q6UVJ0 657 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 CLEC17AQ6ZS10 378 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 FUKQ8N0W3 1084 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 PPM1KQ8N3J5 372 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 PJA1Q8NG27 643 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 OVCA2Q8WZ82 227 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 USP13Q92995 863 aaPredicted RBP11.52□□□□□ -0.57
CLIP3-203ENST00000586457 ZFYVE19Q96K21 471 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 OSBPL6Q9BZF3 934 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 FOXQ1Q9C009 403 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms