RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 GRHL1Q9NZI5 618 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 VPS18Q9P253 973 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 PTPN22Q9Y2R2 807 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 GABRDO14764 452 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 NDC80O14777 642 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 PDGFRBP09619 1106 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 TCF4P15884 667 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 CD52P31358 61 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 HSD17B3P37058 310 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 KCNJ1P48048 391 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 PLTPP55058 493 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 DHX9Q08211 1270 aaKnown RBP14.9□□□□□ -0.02
LIG3-205ENST00000585941 SNX1Q13596 522 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 LPIN1Q14693 890 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 SLMAPQ14BN4 828 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 TAZQ16635 292 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 ATP13A4Q4VNC1 1196 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 AGMOQ6ZNB7 445 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 ZNF365Q70YC5 407 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 B3GALNT2Q8NCR0 500 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 GSTCDQ8NEC7 633 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 CMASQ8NFW8 434 aaPredicted RBP14.9□□□□□ -0.02
LIG3-205ENST00000585941 RXFP2Q8WXD0 754 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 ART4Q93070 314 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 SNF8Q96H20 258 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 HERPUD2Q9BSE4 406 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 DPEP3Q9H4B8 488 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 RNF19AQ9NV58 838 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 USP18Q9UMW8 372 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 DRG1Q9Y295 367 aaKnown RBP14.9□□□□□ -0.02
LIG3-205ENST00000585941 FAN1Q9Y2M0 1017 aa14.9□□□□□ -0.02
LIG3-205ENST00000585941 PI4K2BG5E9Z4 385 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 TRUB2O95900 331 aaKnown RBP14.89□□□□□ -0.03
LIG3-205ENST00000585941 GHRP10912 638 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 KDELR1P24390 212 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 LMO2P25791 158 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 MIPP30301 263 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 RGS7P49802 495 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 ZDHHC24Q6UX98 284 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 FAM43BQ6ZT52 329 aaPredicted RBP14.89□□□□□ -0.03
LIG3-205ENST00000585941 ARFGAP1Q8N6T3 406 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 FBXO25Q8TCJ0 367 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 ATG4AQ8WYN0 398 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 RAPGEF5Q92565 580 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 EXOC4Q96A65 974 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 SENP8Q96LD8 212 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 CCDC114Q96M63 670 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 UROC1Q96N76 676 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 ZWILCHQ9H900 591 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 RSAD1Q9HA92 442 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 HMX1Q9NP08 348 aaPredicted RBP14.89□□□□□ -0.03
LIG3-205ENST00000585941 ASIC3Q9UHC3 531 aa14.89□□□□□ -0.03
LIG3-205ENST00000585941 R3HDM2Q9Y2K5 976 aaKnown RBP14.89□□□□□ -0.03
LIG3-205ENST00000585941 TDRD15B5MCY1 1934 aaKnown RBP14.89□□□□□ -0.03
LIG3-205ENST00000585941 ARHGEF37A1IGU5 675 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 GOLGA6L10A6NI86 522 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 C3orf70A6NLC5 250 aaPredicted RBP14.88□□□□□ -0.03
LIG3-205ENST00000585941 XPO1O14980 1071 aaKnown RBP14.88□□□□□ -0.03
LIG3-205ENST00000585941 LIASO43766 372 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 PRPSAP2O60256 369 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 CCDC130P13994 396 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 SDC4P31431 198 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 EIF3BP55884 814 aaKnown RBP14.88□□□□□ -0.03
LIG3-205ENST00000585941 BYSLQ13895 437 aaKnown RBP14.88□□□□□ -0.03
LIG3-205ENST00000585941 LLGL1Q15334 1064 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 BOLA3Q53S33 107 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 CEP128Q6ZU80 1094 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 BBS12Q6ZW61 710 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 SLC26A9Q7LBE3 791 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 VSIG1Q86XK7 387 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 KCTD6Q8NC69 237 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 SLC2A14Q8TDB8 520 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 TEKT4Q8WW24 435 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 PIK3R5Q8WYR1 880 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 NKD2Q969F2 451 aaPredicted RBP14.88□□□□□ -0.03
LIG3-205ENST00000585941 TBCBQ99426 244 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 TXLNGYQ9BZA5 131 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 KLHL11Q9NVR0 708 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 PLAAQ9Y263 795 aa14.88□□□□□ -0.03
LIG3-205ENST00000585941 PAPSS1O43252 624 aaPredicted RBP14.87□□□□□ -0.03
LIG3-205ENST00000585941 FKTNO75072 461 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 INHAP05111 366 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 KRT10P13645 584 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 ATF2P15336 505 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 PTPN1P18031 435 aaKnown RBP14.87□□□□□ -0.03
LIG3-205ENST00000585941 IL1R2P27930 398 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 ADORA2BP29275 332 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 PTPN9P43378 593 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 GRIK3Q13003 919 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 EFHC1Q5JVL4 640 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 KAZNQ674X7 775 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 TXNRD3NBQ6F5E7 133 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 DSTYKQ6XUX3 929 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 MAP7D3Q8IWC1 876 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 UBLCP1Q8WVY7 318 aaPredicted RBP14.87□□□□□ -0.03
LIG3-205ENST00000585941 LPPQ93052 612 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 ADAM2Q99965 735 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 DUSP16Q9BY84 665 aa14.87□□□□□ -0.03
LIG3-205ENST00000585941 TRMT13Q9NUP7 481 aaKnown RBP14.87□□□□□ -0.03
LIG3-205ENST00000585941 PSD3Q9NYI0 1048 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms