RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 ATG4AQ8WYN0 398 aa11.83□□□□□ -0.52
LIG3-204ENST00000585740 NKD2Q969F2 451 aaPredicted RBP11.83□□□□□ -0.52
LIG3-204ENST00000585740 TNIP3Q96KP6 325 aa11.83□□□□□ -0.52
LIG3-204ENST00000585740 HERPUD2Q9BSE4 406 aa11.83□□□□□ -0.52
LIG3-204ENST00000585740 TMEM109Q9BVC6 243 aa11.83□□□□□ -0.52
LIG3-204ENST00000585740 TMEM106CQ9BVX2 250 aa11.83□□□□□ -0.52
LIG3-204ENST00000585740 STMN4Q9H169 189 aaPredicted RBP11.83□□□□□ -0.52
LIG3-204ENST00000585740 ANAPC5Q9UJX4 755 aa11.83□□□□□ -0.52
LIG3-204ENST00000585740 NEU2Q9Y3R4 380 aa11.83□□□□□ -0.52
LIG3-204ENST00000585740 HES2Q9Y543 173 aa11.83□□□□□ -0.52
LIG3-204ENST00000585740 KIAA0100Q14667 2235 aaKnown RBP11.83□□□□□ -0.52
LIG3-204ENST00000585740 C2CD4BA6NLJ0 364 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 E5RJQ4 531 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 PI4K2BG5E9Z4 385 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 PPEF2O14830 753 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 GPR182O15218 404 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 TRUB2O95900 331 aaKnown RBP11.82□□□□□ -0.52
LIG3-204ENST00000585740 ITGAVP06756 1048 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 IVLP07476 585 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 PFKMP08237 780 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 NR1D1P20393 614 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 WARSP23381 471 aaKnown RBP11.82□□□□□ -0.52
LIG3-204ENST00000585740 PAX3P23760 479 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 KDELR1P24390 212 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 CST5P28325 142 aaPredicted RBP11.82□□□□□ -0.52
LIG3-204ENST00000585740 CTGFP29279 349 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 VCPP55072 806 aaKnown RBP11.82□□□□□ -0.52
LIG3-204ENST00000585740 IRX5P78411 483 aaPredicted RBP11.82□□□□□ -0.52
LIG3-204ENST00000585740 SLC6A3Q01959 620 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 ADCY2Q08462 1091 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 BST2Q10589 180 aaKnown RBP11.82□□□□□ -0.52
LIG3-204ENST00000585740 SOWAHAQ2M3V2 549 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 NBPF20Q3BBV1 942 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 KRT71Q3SY84 523 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 ATP13A4Q4VNC1 1196 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 GLRA4Q5JXX5 417 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 KAZNQ674X7 775 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 RHBDF2Q6PJF5 856 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 FAM183BPQ6ZVS7 135 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 BBS12Q6ZW61 710 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 TMEM130Q8N3G9 435 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 ANKRD52Q8NB46 1076 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 SMG8Q8ND04 991 aaKnown RBP11.82□□□□□ -0.52
LIG3-204ENST00000585740 CMASQ8NFW8 434 aaPredicted RBP11.82□□□□□ -0.52
LIG3-204ENST00000585740 SLC35F5Q8WV83 523 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 RXFP2Q8WXD0 754 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 TRIB2Q92519 343 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 RAPGEF5Q92565 580 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 HSFY1Q96LI6 401 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 TBCBQ99426 244 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 CAPS2Q9BXY5 557 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 ROPN1BQ9BZX4 212 aaPredicted RBP11.82□□□□□ -0.52
LIG3-204ENST00000585740 RSAD1Q9HA92 442 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 ROPN1Q9HAT0 212 aaPredicted RBP11.82□□□□□ -0.52
LIG3-204ENST00000585740 TJP2Q9UDY2 1190 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 USP18Q9UMW8 372 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 ZNF148Q9UQR1 794 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 GIT1Q9Y2X7 761 aa11.82□□□□□ -0.52
LIG3-204ENST00000585740 MYADML2A6NDP7 307 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 C3orf70A6NLC5 250 aaPredicted RBP11.81□□□□□ -0.52
LIG3-204ENST00000585740 SRRM3A6NNA2 597 aaPredicted RBP11.81□□□□□ -0.52
LIG3-204ENST00000585740 SMAPO00193 183 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 CABYRO75952 493 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 KRT10P13645 584 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 TCF4P15884 667 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 PDGFRAP16234 1089 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 IVDP26440 423 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 MIPP30301 263 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 SDC4P31431 198 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 RPL34P49207 117 aaKnown RBP11.81□□□□□ -0.52
LIG3-204ENST00000585740 FLT3LGP49771 235 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 RAB27AP51159 221 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 ITGA8P53708 1063 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 SLC8A3P57103 927 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 TFDP2Q14188 446 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 PDK2Q15119 407 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 LLGL1Q15334 1064 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 BOLA3Q53S33 107 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 FAM47CQ5HY64 1035 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 C6orf118Q5T5N4 469 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 PCGF5Q86SE9 256 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 SERINC5Q86VE9 423 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 TTC30AQ86WT1 665 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 MAP7D3Q8IWC1 876 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 ALLCQ8N6M5 410 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 EMC1Q8N766 993 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 PCSK9Q8NBP7 692 aaKnown RBP11.81□□□□□ -0.52
LIG3-204ENST00000585740 KCTD6Q8NC69 237 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 TEKT4Q8WW24 435 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 PPP1R10Q96QC0 940 aaKnown RBP11.81□□□□□ -0.52
LIG3-204ENST00000585740 ZWILCHQ9H900 591 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 PCDH9Q9HC56 1237 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 KLHL11Q9NVR0 708 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 CWC15Q9P013 229 aaKnown RBP11.81□□□□□ -0.52
LIG3-204ENST00000585740 KLK14Q9P0G3 267 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 GABRQQ9UN88 632 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 TRIOBPQ9H2D6 2365 aa11.81□□□□□ -0.52
LIG3-204ENST00000585740 ZNF487B1APH4 448 aa11.8□□□□□ -0.52
LIG3-204ENST00000585740 DNALI1O14645 258 aaPredicted RBP11.8□□□□□ -0.52
LIG3-204ENST00000585740 RIPK2O43353 540 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms