RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 SFMBT2Q5VUG0 894 aa16.43■□□□□ 0.22
SS18-216ENST00000580751 PAQR9Q6ZVX9 377 aa16.43■□□□□ 0.22
SS18-216ENST00000580751 LEMD2Q8NC56 503 aa16.43■□□□□ 0.22
SS18-216ENST00000580751 ATXN2LQ8WWM7 1075 aaKnown RBP16.43■□□□□ 0.22
SS18-216ENST00000580751 SUSD6Q92537 303 aa16.43■□□□□ 0.22
SS18-216ENST00000580751 C8orf48Q96LL4 319 aa16.43■□□□□ 0.22
SS18-216ENST00000580751 F8VP50 259 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 F8VZ95 297 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 RNF225M0QZC1 329 aaPredicted RBP16.42■□□□□ 0.22
SS18-216ENST00000580751 ARHGAP6O43182 974 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 SOX5P35711 763 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 PRKCIP41743 596 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 SLC8A3P57103 927 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 BPIFB4P59827 614 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 CBX2Q14781 532 aaPredicted RBP16.42■□□□□ 0.22
SS18-216ENST00000580751 TAF12Q16514 161 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 DDR2Q16832 855 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 PPP1R26Q5T8A7 1209 aaPredicted RBP16.42■□□□□ 0.22
SS18-216ENST00000580751 PTCRAQ6ISU1 281 aaPredicted RBP16.42■□□□□ 0.22
SS18-216ENST00000580751 FAM71AQ8IYT1 594 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 CCDC170Q8IYT3 715 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 PSMG2Q969U7 264 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 SPATA17Q96L03 361 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 GPR88Q9GZN0 384 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 NLRC4Q9NPP4 1024 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 EHD2Q9NZN4 543 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 HESX1Q9UBX0 185 aa16.42■□□□□ 0.22
SS18-216ENST00000580751 SSU72P8A0A1W2PR75 194 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 GRXCR2A6NFK2 248 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 LRRC53A6NM62 1247 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 O00370 1275 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 FOXN3O00409 490 aaPredicted RBP16.41■□□□□ 0.22
SS18-216ENST00000580751 MED7O43513 233 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 GFPT2O94808 682 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 SERPING1P05155 500 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 CSH1P0DML2 217 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 CSH2P0DML3 217 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 SKILP12757 684 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 NPR3P17342 541 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 PTPN2P17706 415 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 GNA15P30679 374 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 GPR15P49685 360 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 MRPS5P82675 430 aaKnown RBP16.41■□□□□ 0.22
SS18-216ENST00000580751 PTK2Q05397 1052 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 GOLGA7BQ2TAP0 167 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 PABPC1LQ4VXU2 614 aaKnown RBP16.41■□□□□ 0.22
SS18-216ENST00000580751 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.41■□□□□ 0.22
SS18-216ENST00000580751 CSNK1G1Q9HCP0 422 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 WDR6Q9NNW5 1121 aaKnown RBP16.41■□□□□ 0.22
SS18-216ENST00000580751 ASAH2Q9NR71 780 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 TSPAN16Q9UKR8 245 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 CLUHO75153 1309 aa16.41■□□□□ 0.22
SS18-216ENST00000580751 C2orf16Q68DN1 1984 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 CYP26A1O43174 497 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 FGF19O95750 216 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 BRD2P25440 801 aaKnown RBP16.4■□□□□ 0.22
SS18-216ENST00000580751 CACNA2D1P54289 1103 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 BCAT1P54687 386 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 CCZ1BP86790 482 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 CCZ1P86791 482 aaPredicted RBP16.4■□□□□ 0.22
SS18-216ENST00000580751 SMAD2Q15796 467 aaKnown RBP16.4■□□□□ 0.22
SS18-216ENST00000580751 CNGA2Q16280 664 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 ASIC2Q16515 512 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 CYP4A22Q5TCH4 519 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 LCLAT1Q6UWP7 414 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 CLEC20AQ6ZU45 233 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 DENND5BQ6ZUT9 1274 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 PDZD4Q76G19 769 aaPredicted RBP16.4■□□□□ 0.22
SS18-216ENST00000580751 GRASPQ7Z6J2 395 aaPredicted RBP16.4■□□□□ 0.22
SS18-216ENST00000580751 DNAJB7Q7Z6W7 309 aaPredicted RBP16.4■□□□□ 0.22
SS18-216ENST00000580751 TMEM139Q8IV31 216 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 ANKRD52Q8NB46 1076 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 GIPC2Q8TF65 315 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 TFAP2BQ92481 460 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 CORO1BQ9BR76 489 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 DUSP16Q9BY84 665 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 PNPLA8Q9NP80 782 aa16.4■□□□□ 0.22
SS18-216ENST00000580751 AVENQ9NQS1 362 aaPredicted RBP16.4■□□□□ 0.22
SS18-216ENST00000580751 DNMT3BQ9UBC3 853 aaKnown RBP16.4■□□□□ 0.22
SS18-216ENST00000580751 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.4■□□□□ 0.22
SS18-216ENST00000580751 SLC38A8A6NNN8 435 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 ZNF197O14709 1029 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 THAP12O43422 761 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 RHOP08100 348 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 PNMA6AP0CW24 399 aaPredicted RBP16.39■□□□□ 0.21
SS18-216ENST00000580751 SETSIPP0DME0 302 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 EPHA5P54756 1037 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 MAP3K7CLP57077 242 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 BST2Q10589 180 aaKnown RBP16.39■□□□□ 0.21
SS18-216ENST00000580751 MAPK8IP2Q13387 824 aaPredicted RBP16.39■□□□□ 0.21
SS18-216ENST00000580751 SDHAF4Q5VUM1 108 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 WDR59Q6PJI9 974 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 IRF2BP2Q7Z5L9 587 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 FEZF2Q8TBJ5 459 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 GPR152Q8TDT2 470 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 TRMT2BQ96GJ1 504 aaKnown RBP16.39■□□□□ 0.21
SS18-216ENST00000580751 MYRFLQ96LU7 910 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 KCNK16Q96T55 309 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 SMOQ99835 787 aa16.39■□□□□ 0.21
SS18-216ENST00000580751 KCNF1Q9H3M0 494 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms