RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CTNNB1P35222 781 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 BMPR1AP36894 532 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 RPL7AP62424 266 aaKnown RBP26.48■■□□□ 1.83
SHMT1-207ENST00000580002 DSG1Q02413 1049 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 TAF5Q15542 800 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 SDHAF4Q5VUM1 108 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 FAM183BPQ6ZVS7 135 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 TMEM110Q86TL2 294 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 SPATA2LQ8IUW3 424 aaPredicted RBP26.48■■□□□ 1.83
SHMT1-207ENST00000580002 NOX5Q96PH1 765 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 MTRRQ9UBK8 725 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 SLC27A5Q9Y2P5 690 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 NLRC5Q86WI3 1866 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 HHLA1C9JL84 531 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 XPO1O14980 1071 aaKnown RBP26.48■■□□□ 1.83
SHMT1-207ENST00000580002 PAPSS1O43252 624 aaPredicted RBP26.48■■□□□ 1.83
SHMT1-207ENST00000580002 CALB1P05937 261 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 CPB1P15086 417 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 DNAJB1P25685 340 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 OR1D2P34982 312 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 PLA2G4AP47712 749 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 LIN9Q5TKA1 542 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 DCP1BQ8IZD4 617 aaKnown RBP26.48■■□□□ 1.83
SHMT1-207ENST00000580002 TXLNBQ8N3L3 684 aa26.48■■□□□ 1.83
SHMT1-207ENST00000580002 ZNF564Q8TBZ8 553 aaPredicted RBP26.48■■□□□ 1.83
SHMT1-207ENST00000580002 AVENQ9NQS1 362 aaPredicted RBP26.48■■□□□ 1.83
SHMT1-207ENST00000580002 TMEM110-MUSTN1A8MSY1 372 aa26.47■■□□□ 1.83
SHMT1-207ENST00000580002 H7C4K7 107 aa26.47■■□□□ 1.83
SHMT1-207ENST00000580002 BUB1BO60566 1050 aaPredicted RBP26.47■■□□□ 1.83
SHMT1-207ENST00000580002 SETSIPP0DME0 302 aa26.47■■□□□ 1.83
SHMT1-207ENST00000580002 GLUD2P49448 558 aa26.47■■□□□ 1.83
SHMT1-207ENST00000580002 OR6B2Q6IFH4 312 aa26.47■■□□□ 1.83
SHMT1-207ENST00000580002 RNF10Q8N5U6 811 aaKnown RBP26.47■■□□□ 1.83
SHMT1-207ENST00000580002 JOSD2Q8TAC2 188 aa26.47■■□□□ 1.83
SHMT1-207ENST00000580002 SMARCD1Q96GM5 515 aa26.47■■□□□ 1.83
SHMT1-207ENST00000580002 PCDHGC5Q9Y5F6 944 aa26.47■■□□□ 1.83
SHMT1-207ENST00000580002 MYH10P35580 1976 aa26.47■■□□□ 1.83
SHMT1-207ENST00000580002 WDR27A2RRH5 827 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 F8VP50 259 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 ENC1O14682 589 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 FTCDO95954 541 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 MYBL1P10243 752 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 PPM1AP35813 382 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 RPL34P49207 117 aaKnown RBP26.46■■□□□ 1.83
SHMT1-207ENST00000580002 LRRC57Q8N9N7 239 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 CSNK1G1Q9HCP0 422 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 MTMR11A4FU01 709 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 NCK2O43639 380 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 GRAP2O75791 330 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 ROR1Q01973 937 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 OGDHQ02218 1023 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 GPR17Q13304 367 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 MAPRE1Q15691 268 aaKnown RBP26.46■■□□□ 1.83
SHMT1-207ENST00000580002 DDR2Q16832 855 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 PPP1R15BQ5SWA1 713 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 RHOT2Q8IXI1 618 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 STK32AQ8WU08 396 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 KHSRPQ92945 711 aaKnown RBP eCLIP26.46■■□□□ 1.83
SHMT1-207ENST00000580002 MCRS1Q96EZ8 462 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 TRIM11Q96F44 468 aa26.46■■□□□ 1.83
SHMT1-207ENST00000580002 ERVFC1P60507 584 aa26.45■■□□□ 1.82
SHMT1-207ENST00000580002 KRT17Q04695 432 aa26.45■■□□□ 1.82
SHMT1-207ENST00000580002 ADIGQ0VDE8 80 aa26.45■■□□□ 1.82
SHMT1-207ENST00000580002 TCEAL1Q15170 157 aa26.45■■□□□ 1.82
SHMT1-207ENST00000580002 DAB2IPQ5VWQ8 1189 aa26.45■■□□□ 1.82
SHMT1-207ENST00000580002 SLC8B1Q6J4K2 584 aa26.45■■□□□ 1.82
SHMT1-207ENST00000580002 DNAJC24Q6P3W2 148 aa26.45■■□□□ 1.82
SHMT1-207ENST00000580002 C4orf50Q6ZRC1 276 aa26.45■■□□□ 1.82
SHMT1-207ENST00000580002 SCN4BQ8IWT1 228 aa26.45■■□□□ 1.82
SHMT1-207ENST00000580002 EMC1Q8N766 993 aa26.45■■□□□ 1.82
SHMT1-207ENST00000580002 GPR152Q8TDT2 470 aa26.45■■□□□ 1.82
SHMT1-207ENST00000580002 MCEEQ96PE7 176 aa26.45■■□□□ 1.82
SHMT1-207ENST00000580002 ZBP1Q9H171 429 aa26.45■■□□□ 1.82
SHMT1-207ENST00000580002 METTL5Q9NRN9 209 aaKnown RBP26.45■■□□□ 1.82
SHMT1-207ENST00000580002 PACSIN2Q9UNF0 486 aaPredicted RBP26.45■■□□□ 1.82
SHMT1-207ENST00000580002 BACE2Q9Y5Z0 518 aa26.45■■□□□ 1.82
SHMT1-207ENST00000580002 LILRB3O75022 631 aa26.44■■□□□ 1.82
SHMT1-207ENST00000580002 RNASE9P60153 205 aaKnown RBP26.44■■□□□ 1.82
SHMT1-207ENST00000580002 ZNF268Q14587 947 aaPredicted RBP26.44■■□□□ 1.82
SHMT1-207ENST00000580002 MESDQ14696 234 aa26.44■■□□□ 1.82
SHMT1-207ENST00000580002 C3orf20Q8ND61 904 aa26.44■■□□□ 1.82
SHMT1-207ENST00000580002 CERS4Q9HA82 394 aa26.44■■□□□ 1.82
SHMT1-207ENST00000580002 PARVAQ9NVD7 372 aa26.44■■□□□ 1.82
SHMT1-207ENST00000580002 ANAPC7Q9UJX3 599 aa26.44■■□□□ 1.82
SHMT1-207ENST00000580002 PCDHB5Q9Y5E4 795 aa26.44■■□□□ 1.82
SHMT1-207ENST00000580002 PLXNA4Q9HCM2 1894 aa26.44■■□□□ 1.82
SHMT1-207ENST00000580002 MTA2O94776 668 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 RFC1P35251 1148 aaPredicted RBP26.43■■□□□ 1.82
SHMT1-207ENST00000580002 GRIK1P39086 918 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 DUSP4Q13115 394 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 TRNP1Q6NT89 227 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 PPP1R2P3Q6NXS1 205 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 OLFML1Q6UWY5 402 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 SCAMP5Q8TAC9 235 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 FEZF2Q8TBJ5 459 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 IPO4Q8TEX9 1081 aaKnown RBP26.43■■□□□ 1.82
SHMT1-207ENST00000580002 HSFY1Q96LI6 401 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 UVRAGQ9P2Y5 699 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 GBF1Q92538 1859 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 PTPRDP23468 1912 aa26.43■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms