RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 VIPR2P41587 438 aa20.49■□□□□ 0.87
SS18-208ENST00000577751 YWHAEP62258 255 aaKnown RBP20.49■□□□□ 0.87
SS18-208ENST00000577751 PPP1R26Q5T8A7 1209 aaPredicted RBP20.49■□□□□ 0.87
SS18-208ENST00000577751 VITQ6UXI7 678 aa20.49■□□□□ 0.87
SS18-208ENST00000577751 HFE2Q6ZVN8 426 aa20.49■□□□□ 0.87
SS18-208ENST00000577751 MON1AQ86VX9 555 aa20.49■□□□□ 0.87
SS18-208ENST00000577751 MRPS31Q92665 395 aaKnown RBP20.49■□□□□ 0.87
SS18-208ENST00000577751 KRT82Q9NSB4 513 aa20.49■□□□□ 0.87
SS18-208ENST00000577751 SAMSN1Q9NSI8 373 aaKnown RBP20.49■□□□□ 0.87
SS18-208ENST00000577751 GTPBP10A4D1E9 387 aaKnown RBP20.48■□□□□ 0.87
SS18-208ENST00000577751 CFHP08603 1231 aa20.48■□□□□ 0.87
SS18-208ENST00000577751 ACO1P21399 889 aaKnown RBP20.48■□□□□ 0.87
SS18-208ENST00000577751 MTIF2P46199 727 aaKnown RBP20.48■□□□□ 0.87
SS18-208ENST00000577751 GCNT1Q02742 428 aa20.48■□□□□ 0.87
SS18-208ENST00000577751 MAN2A1Q16706 1144 aa20.48■□□□□ 0.87
SS18-208ENST00000577751 TXNDC8Q6A555 127 aa20.48■□□□□ 0.87
SS18-208ENST00000577751 PHLDB3Q6NSJ2 640 aa20.48■□□□□ 0.87
SS18-208ENST00000577751 CLEC20AQ6ZU45 233 aa20.48■□□□□ 0.87
SS18-208ENST00000577751 ARHGEF19Q8IW93 802 aa20.48■□□□□ 0.87
SS18-208ENST00000577751 MFSD6LQ8IWD5 586 aa20.48■□□□□ 0.87
SS18-208ENST00000577751 CMTM8Q8IZV2 173 aa20.48■□□□□ 0.87
SS18-208ENST00000577751 PPM1KQ8N3J5 372 aa20.48■□□□□ 0.87
SS18-208ENST00000577751 RSPRY1Q96DX4 576 aa20.48■□□□□ 0.87
SS18-208ENST00000577751 HEXIM2Q96MH2 286 aaKnown RBP20.48■□□□□ 0.87
SS18-208ENST00000577751 INTS2Q9H0H0 1204 aaKnown RBP20.48■□□□□ 0.87
SS18-208ENST00000577751 COMMD8Q9NX08 183 aa20.48■□□□□ 0.87
SS18-208ENST00000577751 OBP2AQ9NY56 170 aa20.48■□□□□ 0.87
SS18-208ENST00000577751 FAM92AA1XBS5 289 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 HEPACAM2A8MVW5 462 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 RTN3O95197 1032 aaPredicted RBP20.47■□□□□ 0.87
SS18-208ENST00000577751 FAM200BP0CF97 657 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 PSMC3P17980 439 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 ADORA2BP29275 332 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 PPP3CCP48454 512 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 MAP3K7CLP57077 242 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 STX1AQ16623 288 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 MIIPQ5JXC2 388 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 ARHGAP17Q68EM7 881 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 C11orf57Q6ZUT1 292 aaPredicted RBP20.47■□□□□ 0.87
SS18-208ENST00000577751 MAB21L3Q8N8X9 362 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 DEPDC1BQ8WUY9 529 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 KAT5Q92993 513 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 PBXIP1Q96AQ6 731 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 GCNT4Q9P109 453 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 NFE2L3Q9Y4A8 694 aa20.47■□□□□ 0.87
SS18-208ENST00000577751 ZNF840PA6NDX5 716 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 HHLA1C9JL84 531 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 PRAMEF12O95522 483 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 EEF1GP26641 437 aaKnown RBP20.46■□□□□ 0.87
SS18-208ENST00000577751 YWHAQP27348 245 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 SLC5A3P53794 718 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 TAF10Q12962 218 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 CAVIN1Q6NZI2 390 aaKnown RBP20.46■□□□□ 0.87
SS18-208ENST00000577751 TRIM65Q6PJ69 517 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 RRAGAQ7L523 313 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 GPIHBP1Q8IV16 184 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 SCAMP5Q8TAC9 235 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 JAKMIP2Q96AA8 810 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 KREMEN1Q96MU8 473 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 LRRC3BQ96PB8 259 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 TUBGCP2Q9BSJ2 902 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 TRMT61BQ9BVS5 477 aaKnown RBP20.46■□□□□ 0.87
SS18-208ENST00000577751 DUSP16Q9BY84 665 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 PNPLA8Q9NP80 782 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 KIAA1257Q9ULG3 409 aa20.46■□□□□ 0.87
SS18-208ENST00000577751 KRBA1A5PL33 1030 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 KCNJ18B7U540 433 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 RNF225M0QZC1 329 aaPredicted RBP20.45■□□□□ 0.86
SS18-208ENST00000577751 PDGFBP01127 241 aaPredicted RBP20.45■□□□□ 0.86
SS18-208ENST00000577751 NPR3P17342 541 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 PFKLP17858 780 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 SLC9A1P19634 815 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 PFKPQ01813 784 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 FCHO2Q0JRZ9 810 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 GRM2Q14416 872 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 KCNJ12Q14500 433 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 KLHL40Q2TBA0 621 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 VWA3BQ502W6 1294 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 HSP90AA4PQ58FG1 418 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 TCP11X2Q5H9J9 407 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 CDKAL1Q5VV42 579 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 GBP6Q6ZN66 633 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 OVCA2Q8WZ82 227 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 SLITRK1Q96PX8 696 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 CRACR2AQ9BSW2 395 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 NDST4Q9H3R1 872 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 TRPV5Q9NQA5 729 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 TRPM5Q9NZQ8 1165 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 FBXL21Q9UKT6 434 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 CNTN6Q9UQ52 1028 aa20.45■□□□□ 0.86
SS18-208ENST00000577751 COL4A2P08572 1712 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 C2orf78A6NCI8 922 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 PAEPP09466 180 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 VDRP11473 427 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 PRKCSHP14314 528 aaPredicted RBP20.44■□□□□ 0.86
SS18-208ENST00000577751 AVPR1AP37288 418 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 TYRO3Q06418 890 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 ZNF268Q14587 947 aaPredicted RBP20.44■□□□□ 0.86
SS18-208ENST00000577751 EXOC3L4Q17RC7 722 aa20.44■□□□□ 0.86
SS18-208ENST00000577751 IER5LQ5T953 404 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms