RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 SLC38A8A6NNN8 435 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 MOSPD3O75425 235 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 ASGR2P07307 311 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 HMGA1P17096 107 aaKnown RBP16.78■□□□□ 0.28
CHD3-215ENST00000572750 TRIM21P19474 475 aaKnown RBP16.78■□□□□ 0.28
CHD3-215ENST00000572750 SLC9A1P19634 815 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 ANXA13P27216 316 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 GABRR2P28476 465 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 YWHAEP62258 255 aaKnown RBP16.78■□□□□ 0.28
CHD3-215ENST00000572750 EXOC3L4Q17RC7 722 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 PHLDB3Q6NSJ2 640 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 GJB7Q6PEY0 223 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 POTEHQ6S545 545 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 SUGP1Q8IWZ8 645 aaKnown RBP16.78■□□□□ 0.28
CHD3-215ENST00000572750 DHX40Q8IX18 779 aaKnown RBP16.78■□□□□ 0.28
CHD3-215ENST00000572750 ZDHHC14Q8IZN3 488 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 TTC39CQ8N584 583 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 LEMD2Q8NC56 503 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 ASIC4Q96FT7 647 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 KREMEN1Q96MU8 473 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.78■□□□□ 0.28
CHD3-215ENST00000572750 EPS15L1Q9UBC2 864 aa16.78■□□□□ 0.28
CHD3-215ENST00000572750 CACNA1GO43497 2377 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 TRIM66O15016 1216 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 AP1G2O75843 785 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 NOL4O94818 638 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 LAMP2P13473 410 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 ZNF18P17022 549 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 ACO1P21399 889 aaKnown RBP16.77■□□□□ 0.28
CHD3-215ENST00000572750 PON1P27169 355 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 ZNF165P49910 485 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 CYP4F8P98187 520 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 GCNT1Q02742 428 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 TEAD2Q15562 447 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 STXBP5Q5T5C0 1151 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 TMEM270Q6UE05 265 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 GAREM2Q75VX8 874 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 TMEM176AQ96HP8 235 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 VPS16Q9H269 839 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 FAM124BQ9H5Z6 455 aaPredicted RBP16.77■□□□□ 0.28
CHD3-215ENST00000572750 IL21Q9HBE4 155 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 DMAP1Q9NPF5 467 aaPredicted RBP16.77■□□□□ 0.28
CHD3-215ENST00000572750 APEX2Q9UBZ4 518 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 LIMD1Q9UGP4 676 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 PCDHB4Q9Y5E5 795 aa16.77■□□□□ 0.28
CHD3-215ENST00000572750 ZNF197O14709 1029 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 CSH1P0DML2 217 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 CSH2P0DML3 217 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 ATP1A3P13637 1013 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 AVPR2P30518 371 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 USP46P62068 366 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 PPP1R26Q5T8A7 1209 aaPredicted RBP16.76■□□□□ 0.27
CHD3-215ENST00000572750 PLCD3Q8N3E9 789 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 JAKMIP2Q96AA8 810 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 MCRS1Q96EZ8 462 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 CYFIP2Q96F07 1278 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 SPATA17Q96L03 361 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 C8orf48Q96LL4 319 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 HEXIM2Q96MH2 286 aaKnown RBP16.76■□□□□ 0.27
CHD3-215ENST00000572750 GCNAQ96QF7 691 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 KCNK16Q96T55 309 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 SMOQ99835 787 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 ATXN3LQ9H3M9 355 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 SLITRK6Q9H5Y7 841 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 SIX2Q9NPC8 291 aa16.76■□□□□ 0.27
CHD3-215ENST00000572750 UBE2TQ9NPD8 197 aaPredicted RBP16.76■□□□□ 0.27
CHD3-215ENST00000572750 AJAP1Q9UKB5 411 aaPredicted RBP16.76■□□□□ 0.27
CHD3-215ENST00000572750 ANAPC1Q9H1A4 1944 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 MED19A0JLT2 244 aaPredicted RBP16.75■□□□□ 0.27
CHD3-215ENST00000572750 TADA3O75528 432 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 BEST1O76090 585 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 CALCAP01258 141 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 FAM200BP0CF97 657 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 ID4P47928 161 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 COPB1P53618 953 aaKnown RBP16.75■□□□□ 0.27
CHD3-215ENST00000572750 MAP3K7CLP57077 242 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 IFRD2Q12894 506 aaPredicted RBP16.75■□□□□ 0.27
CHD3-215ENST00000572750 HTR4Q13639 388 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 CLEC20AQ6ZU45 233 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 DENND5BQ6ZUT9 1274 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 TMEM150AQ86TG1 271 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 RBBP8NLQ8NC74 664 aaPredicted RBP16.75■□□□□ 0.27
CHD3-215ENST00000572750 ZMIZ2Q8NF64 920 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 RSAD2Q8WXG1 361 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 TRMT2BQ96GJ1 504 aaKnown RBP16.75■□□□□ 0.27
CHD3-215ENST00000572750 ZSWIM3Q96MP5 696 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 HNRNPABQ99729 332 aaKnown RBP16.75■□□□□ 0.27
CHD3-215ENST00000572750 DNAI2Q9GZS0 605 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 SMOC2Q9H3U7 446 aa16.75■□□□□ 0.27
CHD3-215ENST00000572750 FGF19O95750 216 aa16.74■□□□□ 0.27
CHD3-215ENST00000572750 PDGFBP01127 241 aaPredicted RBP16.74■□□□□ 0.27
CHD3-215ENST00000572750 TPM2P07951 284 aa16.74■□□□□ 0.27
CHD3-215ENST00000572750 KRT5P13647 590 aa16.74■□□□□ 0.27
CHD3-215ENST00000572750 CD19P15391 556 aa16.74■□□□□ 0.27
CHD3-215ENST00000572750 CDC25CP30307 473 aa16.74■□□□□ 0.27
CHD3-215ENST00000572750 ZNF132P52740 706 aa16.74■□□□□ 0.27
CHD3-215ENST00000572750 PTPN21Q16825 1174 aa16.74■□□□□ 0.27
CHD3-215ENST00000572750 ARHGAP44Q17R89 818 aa16.74■□□□□ 0.27
CHD3-215ENST00000572750 GOLGA7BQ2TAP0 167 aa16.74■□□□□ 0.27
CHD3-215ENST00000572750 PARM1Q6UWI2 310 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms