RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 HNRNPDLO14979 420 aaKnown RBP11.9□□□□□ -0.5
VPS53-207ENST00000570510 SLC6A11P48066 632 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 ENOX2Q16206 610 aaKnown RBP11.9□□□□□ -0.5
VPS53-207ENST00000570510 ECM1Q16610 540 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 ZC2HC1CQ53FD0 456 aaPredicted RBP11.9□□□□□ -0.5
VPS53-207ENST00000570510 BTBD8Q5XKL5 378 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 FILIP1Q7Z7B0 1213 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 GLRX5Q86SX6 157 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 SCN4BQ8IWT1 228 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 DAW1Q8N136 415 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 PDCD7Q8N8D1 485 aaKnown RBP11.9□□□□□ -0.5
VPS53-207ENST00000570510 ZNF513Q8N8E2 541 aaPredicted RBP11.9□□□□□ -0.5
VPS53-207ENST00000570510 RHBDD1Q8TEB9 315 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 TRMT2BQ96GJ1 504 aaKnown RBP11.9□□□□□ -0.5
VPS53-207ENST00000570510 ZSCAN31Q96LW9 406 aaPredicted RBP11.9□□□□□ -0.5
VPS53-207ENST00000570510 TIPINQ9BVW5 301 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 CALCOCO1Q9P1Z2 691 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 PCOLCE2Q9UKZ9 415 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 ARHGAP26Q9UNA1 814 aa11.9□□□□□ -0.5
VPS53-207ENST00000570510 APC2O95996 2303 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 BPTFQ12830 3046 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 MEI4A8MW99 385 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 LEFTY2O00292 366 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 PIRO00625 290 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 OGTO15294 1046 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 RRP8O43159 456 aaKnown RBP11.89□□□□□ -0.51
VPS53-207ENST00000570510 CER1O95813 267 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 ABL1P00519 1130 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 CYP17A1P05093 508 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 NFICP08651 508 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 MAPTP10636 758 aaKnown RBP11.89□□□□□ -0.51
VPS53-207ENST00000570510 PLS3P13797 630 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 HOXB2P14652 356 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 CYP2F1P24903 491 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 EIF2DP41214 584 aaKnown RBP11.89□□□□□ -0.51
VPS53-207ENST00000570510 ATP2C1P98194 919 aaPredicted RBP11.89□□□□□ -0.51
VPS53-207ENST00000570510 GRIK2Q13002 908 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 GNL2Q13823 731 aaKnown RBP11.89□□□□□ -0.51
VPS53-207ENST00000570510 DHCR24Q15392 516 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 ZRSR1Q15695 479 aaKnown RBP11.89□□□□□ -0.51
VPS53-207ENST00000570510 SV2CQ496J9 727 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 KRT79Q5XKE5 535 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 LARP1BQ659C4 914 aaKnown RBP11.89□□□□□ -0.51
VPS53-207ENST00000570510 RINT1Q6NUQ1 792 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 SPATA2LQ8IUW3 424 aaPredicted RBP11.89□□□□□ -0.51
VPS53-207ENST00000570510 ADGRG2Q8IZP9 1017 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 LSM14AQ8ND56 463 aaKnown RBP11.89□□□□□ -0.51
VPS53-207ENST00000570510 TMEM161BQ8NDZ6 487 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 ENGASEQ8NFI3 743 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 LRRC15Q8TF66 581 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 SPIRE2Q8WWL2 714 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 LLPHQ9BRT6 129 aaKnown RBP11.89□□□□□ -0.51
VPS53-207ENST00000570510 NTPCRQ9BSD7 190 aaKnown RBP11.89□□□□□ -0.51
VPS53-207ENST00000570510 MSTO1Q9BUK6 570 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 RUSC1Q9BVN2 902 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 MIR1-1HGQ9H1L0 117 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 TRPM5Q9NZQ8 1165 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 ADAMTS9Q9P2N4 1935 aa11.89□□□□□ -0.51
VPS53-207ENST00000570510 KPNA7A9QM74 516 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 ADAM23O75077 832 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 GJB3O75712 270 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 C1QL1O75973 258 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 NOL4O94818 638 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 ADH5P11766 374 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 HLA-EP13747 358 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 GABRG2P18507 467 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 KIR2DL1P43626 348 aaPredicted RBP11.88□□□□□ -0.51
VPS53-207ENST00000570510 NEK4P51957 841 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 MYL7Q01449 175 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 ORC2Q13416 577 aaPredicted RBP11.88□□□□□ -0.51
VPS53-207ENST00000570510 SUZ12Q15022 739 aaKnown RBP11.88□□□□□ -0.51
VPS53-207ENST00000570510 RABEP1Q15276 862 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 SLC41A1Q8IVJ1 513 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 SFTPA1Q8IWL2 248 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 MYRFLQ96LU7 910 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 ZNF560Q96MR9 790 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 ARID3AQ99856 593 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 GAREM1Q9H706 876 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 ABCB6Q9NP58 842 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 TM7SF3Q9NS93 570 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 TMLHEQ9NVH6 421 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 DPP3Q9NY33 737 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 LARSQ9P2J5 1176 aaKnown RBP11.88□□□□□ -0.51
VPS53-207ENST00000570510 LIMCH1Q9UPQ0 1083 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 DERAQ9Y315 318 aa11.88□□□□□ -0.51
VPS53-207ENST00000570510 IGHV1OR15-9A0A0B4J2B8 117 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 A0A1B0GTW7 788 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 ANO9A1A5B4 782 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 FAM149AA5PLN7 773 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 SCAMP3O14828 347 aaKnown RBP11.87□□□□□ -0.51
VPS53-207ENST00000570510 HUS1O60921 280 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 CBFA2T3O75081 653 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 TADA3O75528 432 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 ATXN1LP0C7T5 689 aaKnown RBP11.87□□□□□ -0.51
VPS53-207ENST00000570510 TCF3P15923 654 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 MAOBP27338 520 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 NTSR1P30989 418 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 MATKP42679 507 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 WASP42768 502 aa11.87□□□□□ -0.51
VPS53-207ENST00000570510 FXR2P51116 673 aaKnown RBP eCLIP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms