RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 SHISA4Q96DD7 197 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 WDR24Q96S15 920 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 PIGSQ96S52 555 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 PPP1R9BQ96SB3 815 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 DBNDD2Q9BQY9 259 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 GLIS2Q9BZE0 524 aaPredicted RBP3.29□□□□□ -1.88
VPS35-209ENST00000568642 DPH1Q9BZG8 443 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 ANKRD2Q9GZV1 360 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 MRPL18Q9H0U6 180 aaKnown RBP3.29□□□□□ -1.88
VPS35-209ENST00000568642 PABPC3Q9H361 631 aaKnown RBP3.29□□□□□ -1.88
VPS35-209ENST00000568642 ZWILCHQ9H900 591 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 SMURF2Q9HAU4 748 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 GRPEL1Q9HAV7 217 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 PDE7BQ9NP56 450 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 IRAK4Q9NWZ3 460 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 DNAJB12Q9NXW2 375 aaKnown RBP3.29□□□□□ -1.88
VPS35-209ENST00000568642 STK26Q9P289 416 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 DNAJB9Q9UBS3 223 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 LPAR3Q9UBY5 353 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 AJAP1Q9UKB5 411 aaPredicted RBP3.29□□□□□ -1.88
VPS35-209ENST00000568642 SIK3Q9Y2K2 1263 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 SNX13Q9Y5W8 968 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 B3GALT1Q9Y5Z6 326 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 MYO15AQ9UKN7 3530 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 HECTD1Q9ULT8 2610 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 PALLDQ8WX93 1383 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 COL11A2P13942 1736 aaPredicted RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 CLCA1A8K7I4 914 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 ISM1B1AKI9 464 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 H0Y8X5 98 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 MAN2B1O00754 1011 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 KCNK3O14649 394 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 AURKAO14965 403 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 SGSM2O43147 1006 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 FSBPO95073 299 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 NDST3O95803 873 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 PLATP00750 562 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 CST3P01034 146 aaPredicted RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 GCP02774 474 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 LPLP06858 475 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 CNPP09543 421 aaKnown RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 KITP10721 976 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 ITGA4P13612 1032 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 IL2RBP14784 551 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 STMN1P16949 149 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 TFEBP19484 476 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 ATP5F1P24539 256 aaPredicted RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 TBXAS1P24557 533 aaPredicted RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 ABCD3P28288 659 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 ATP5DP30049 168 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 LTBRP36941 435 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 STAT5AP42229 794 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 CD151P48509 253 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 CCR9P51686 369 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 RAD23AP54725 363 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 NAP1L1P55209 391 aaKnown RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 SUMO3P55854 103 aaPredicted RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 ERVK-24P63145 666 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 YBX1P67809 324 aaKnown RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 UBE3AQ05086 875 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 C19orf57Q0VDD7 668 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 SGCGQ13326 291 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 SNAPC2Q13487 334 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 EIF4A2Q14240 407 aaKnown RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 ARHGAP15Q53QZ3 475 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 C3orf38Q5JPI3 329 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 C1orf141Q5JVX7 400 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 MBNL2Q5VZF2 373 aaKnown RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 RAB12Q6IQ22 244 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 NFRKBQ6P4R8 1299 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 CRTC1Q6UUV9 634 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 CATSPERGQ6ZRH7 1159 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 SZRD1Q7Z422 152 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 R3HCC1LQ7Z5L2 792 aaKnown RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 PXKQ7Z7A4 578 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 GALNT7Q86SF2 657 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 MICU3Q86XE3 530 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 C2CD5Q86YS7 1000 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 WFDC8Q8IUA0 241 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 TBC1D21Q8IYX1 336 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 ADGRG2Q8IZP9 1017 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 GPC2Q8N158 579 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 CRACR2BQ8N4Y2 399 aaPredicted RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 CCDC33Q8N5R6 958 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 VGLL2Q8N8G2 317 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 TOR1AIP2Q8NFQ8 470 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 LINS1Q8NG48 757 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 GPR150Q8NGU9 434 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 UHMK1Q8TAS1 419 aaKnown RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 DDX54Q8TDD1 881 aaKnown RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 THAP4Q8WY91 577 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 DPF2Q92785 391 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 ATP2A3Q93084 1043 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 MUL1Q969V5 352 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 NMD3Q96D46 503 aaKnown RBP3.28□□□□□ -1.88
VPS35-209ENST00000568642 PERPQ96FX8 193 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 CABS1Q96KC9 395 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 FNBP1Q96RU3 617 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 ATP6V0BQ99437 205 aa3.28□□□□□ -1.88
VPS35-209ENST00000568642 LPIN3Q9BQK8 851 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms