RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 UBE4BO95155 1302 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 CACNA1BQ00975 2339 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 TGFB1I1O43294 461 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 CST3P01034 146 aaPredicted RBP15.94■□□□□ 0.14
CLN3-236ENST00000568558 PFKLP17858 780 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 GRIK1P39086 918 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 PDE6CP51160 858 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 LIMK1P53667 647 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 AMPD3Q01432 767 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 SF3A2Q15428 464 aaKnown RBP15.94■□□□□ 0.14
CLN3-236ENST00000568558 CCDC6Q16204 474 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 RDH13Q8NBN7 331 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 MYCBPAPQ8TBZ2 947 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 DHX58Q96C10 678 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 ZC3H10Q96K80 434 aaKnown RBP15.94■□□□□ 0.14
CLN3-236ENST00000568558 MMS19Q96T76 1030 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 CGRRF1Q99675 332 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 MRPL45Q9BRJ2 306 aaKnown RBP15.94■□□□□ 0.14
CLN3-236ENST00000568558 TTLL2Q9BWV7 592 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 TRPM5Q9NZQ8 1165 aa15.94■□□□□ 0.14
CLN3-236ENST00000568558 TFIP11Q9UBB9 837 aaKnown RBP15.94■□□□□ 0.14
CLN3-236ENST00000568558 TRIM66O15016 1216 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 TACC1O75410 805 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 YEATS4O95619 227 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 NFATC1O95644 943 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 ZNF806P0C7X5 589 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 DLATP10515 647 aaKnown RBP15.93■□□□□ 0.14
CLN3-236ENST00000568558 TNNI1P19237 187 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 ANXA13P27216 316 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 CYP2J2P51589 502 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 ZXDBP98169 803 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 CYP24A1Q07973 514 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 EHHADHQ08426 723 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 NR1H3Q13133 447 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 DMC1Q14565 340 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 PSMD6Q15008 389 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 AASDHQ4L235 1098 aaPredicted RBP15.93■□□□□ 0.14
CLN3-236ENST00000568558 MDH1BQ5I0G3 518 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 PLA2G2CQ5R387 149 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 SHC4Q6S5L8 630 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 IQUBQ8NA54 791 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 C12orf50Q8NA57 414 aaPredicted RBP15.93■□□□□ 0.14
CLN3-236ENST00000568558 ACDQ96AP0 544 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 ZNF396Q96N95 335 aaPredicted RBP15.93■□□□□ 0.14
CLN3-236ENST00000568558 FNBP1Q96RU3 617 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 C7orf25Q9BPX7 421 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 LINC00597Q9H2U6 94 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 EHD2Q9NZN4 543 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 PCDHGA5Q9Y5G8 931 aa15.93■□□□□ 0.14
CLN3-236ENST00000568558 ABCA7Q8IZY2 2146 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 TNRC6BQ9UPQ9 1833 aaKnown RBP15.92■□□□□ 0.14
CLN3-236ENST00000568558 F8VP50 259 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 LEFTY2O00292 366 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 CLIC2O15247 247 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 CUTAO60888 179 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 APBB3O95704 486 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 FAM163BP0C2L3 166 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 GNL1P36915 607 aaPredicted RBP15.92■□□□□ 0.14
CLN3-236ENST00000568558 OPRD1P41143 372 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 SNRPFP62306 86 aaKnown RBP15.92■□□□□ 0.14
CLN3-236ENST00000568558 NOP14P78316 857 aaKnown RBP15.92■□□□□ 0.14
CLN3-236ENST00000568558 PSMD2Q13200 908 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 PLK5Q496M5 336 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 UNC13DQ70J99 1090 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 NELFCDQ8IXH7 590 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 XXYLT1Q8NBI6 393 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 SCFD1Q8WVM8 642 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 CCDC127Q96BQ5 260 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 C8orf48Q96LL4 319 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 GZF1Q9H116 711 aaPredicted RBP15.92■□□□□ 0.14
CLN3-236ENST00000568558 SNX25Q9H3E2 840 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 RXFP3Q9NSD7 469 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 TMEM30AQ9NV96 361 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 EBF1Q9UH73 591 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 MAP1BP46821 2468 aaKnown RBP15.92■□□□□ 0.14
CLN3-236ENST00000568558 PLXND1Q9Y4D7 1925 aa15.92■□□□□ 0.14
CLN3-236ENST00000568558 ZNF840PA6NDX5 716 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 STAU1O95793 577 aaKnown RBP15.91■□□□□ 0.14
CLN3-236ENST00000568558 OLFM2O95897 454 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 MPLP40238 635 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 PPP3CCP48454 512 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 CACNA2D1P54289 1103 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 TNNC1P63316 161 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 SLC7A9P82251 487 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 GAB4Q2WGN9 574 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 WDR72Q3MJ13 1102 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 IL31Q6EBC2 164 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 HS2ST1Q7LGA3 356 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 OR6B3Q8NGW1 331 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 DDX1Q92499 740 aaKnown RBP15.91■□□□□ 0.14
CLN3-236ENST00000568558 ELOVL4Q9GZR5 314 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 RNF38Q9H0F5 515 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 DUSP15Q9H1R2 295 aaPredicted RBP15.91■□□□□ 0.14
CLN3-236ENST00000568558 DPEP3Q9H4B8 488 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 MAGEF1Q9HAY2 307 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 CHD8Q9HCK8 2581 aa15.91■□□□□ 0.14
CLN3-236ENST00000568558 CEP192Q8TEP8 1941 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 MYO18AQ92614 2054 aaKnown RBP15.9■□□□□ 0.14
CLN3-236ENST00000568558 LAMA1P25391 3075 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 OAS1P00973 400 aaKnown RBP15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms