RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 TMEM176AQ96HP8 235 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 ZSWIM1Q9BR11 485 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 TUBGCP2Q9BSJ2 902 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 CRACR2AQ9BSW2 395 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 MED10Q9BTT4 135 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 ATXN3LQ9H3M9 355 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 TRPV4Q9HBA0 871 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 SIX2Q9NPC8 291 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 DMAP1Q9NPF5 467 aaPredicted RBP10.4□□□□□ -0.74
CLK3-220ENST00000567992 IL37Q9NZH6 218 aa10.4□□□□□ -0.74
CLK3-220ENST00000567992 AJAP1Q9UKB5 411 aaPredicted RBP10.4□□□□□ -0.74
CLK3-220ENST00000567992 MAGED2Q9UNF1 606 aaPredicted RBP10.4□□□□□ -0.74
CLK3-220ENST00000567992 KMT2EQ8IZD2 1858 aa10.4□□□□□ -0.75
CLK3-220ENST00000567992 ATP8B3O60423 1300 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 FAM92AA1XBS5 289 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 FAM86C2PA6NEL3 165 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 HHLA1C9JL84 531 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 RNF225M0QZC1 329 aaPredicted RBP10.39□□□□□ -0.75
CLK3-220ENST00000567992 AP1G2O75843 785 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 PRAMEF12O95522 483 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 ZNF18P17022 549 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 SLC9A1P19634 815 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 PON1P27169 355 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 ANXA13P27216 316 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 ADORA2BP29275 332 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 WEE1P30291 646 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 VIPR2P41587 438 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 MYL5Q02045 173 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 SIGLEC14Q08ET2 396 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 CETN1Q12798 172 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 TAF12Q16514 161 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 ANO6Q4KMQ2 910 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 VWA3BQ502W6 1294 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 GPR158Q5T848 1215 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 ARHGAP17Q68EM7 881 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 GJB7Q6PEY0 223 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 TRIM67Q6ZTA4 783 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 APTXQ7Z2E3 356 aaKnown RBP10.39□□□□□ -0.75
CLK3-220ENST00000567992 GPRIN1Q7Z2K8 1008 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 CREBRFQ8IUR6 639 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 ELSPBP1Q96BH3 223 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 CYFIP2Q96F07 1278 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 LRRC3BQ96PB8 259 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 SLC46A2Q9BY10 475 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 GPR88Q9GZN0 384 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 NDST4Q9H3R1 872 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 TASP1Q9H6P5 420 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 FANCLQ9NW38 375 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 CNTN6Q9UQ52 1028 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 WDFY4Q6ZS81 3184 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 TICRRQ7Z2Z1 1910 aa10.39□□□□□ -0.75
CLK3-220ENST00000567992 SYCE3A1L190 88 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 SOBPA7XYQ1 873 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 GPR37L1O60883 481 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 CALCAP01258 141 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 FAM200BP0CF97 657 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 SRFP11831 508 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 PRKCSHP14314 528 aaPredicted RBP10.38□□□□□ -0.75
CLK3-220ENST00000567992 NPR3P17342 541 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 DDX6P26196 483 aaKnown RBP eCLIP10.38□□□□□ -0.75
CLK3-220ENST00000567992 SLC5A3P53794 718 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 MAP3K7CLP57077 242 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 YWHAEP62258 255 aaKnown RBP10.38□□□□□ -0.75
CLK3-220ENST00000567992 KCNMA1Q12791 1236 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 KRT31Q15323 416 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 EXOC3L4Q17RC7 722 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 IER5LQ5T953 404 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 TXNDC8Q6A555 127 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 TMEM270Q6UE05 265 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 VITQ6UXI7 678 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 GBP6Q6ZN66 633 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 MON1AQ86VX9 555 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 TTC30AQ86WT1 665 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 ARID3BQ8IVW6 561 aaPredicted RBP10.38□□□□□ -0.75
CLK3-220ENST00000567992 DHX40Q8IX18 779 aaKnown RBP10.38□□□□□ -0.75
CLK3-220ENST00000567992 NUP93Q8N1F7 819 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 SCAMP5Q8TAC9 235 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 RIN3Q8TB24 985 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 TFAP2BQ92481 460 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 HEXIM2Q96MH2 286 aaKnown RBP10.38□□□□□ -0.75
CLK3-220ENST00000567992 GCNAQ96QF7 691 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 SLC22A12Q96S37 553 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 BPIFA3Q9BQP9 254 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 DUSP16Q9BY84 665 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 SMG9Q9H0W8 520 aaKnown RBP10.38□□□□□ -0.75
CLK3-220ENST00000567992 SLITRK6Q9H5Y7 841 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 SLC2A4RGQ9NR83 387 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 TAB2Q9NYJ8 693 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 UXTQ9UBK9 157 aaPredicted RBP10.38□□□□□ -0.75
CLK3-220ENST00000567992 APEX2Q9UBZ4 518 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 ZNF318Q5VUA4 2279 aa10.38□□□□□ -0.75
CLK3-220ENST00000567992 C2orf78A6NCI8 922 aa10.37□□□□□ -0.75
CLK3-220ENST00000567992 ZNF840PA6NDX5 716 aa10.37□□□□□ -0.75
CLK3-220ENST00000567992 TMEM221A6NGB7 291 aa10.37□□□□□ -0.75
CLK3-220ENST00000567992 HEPACAM2A8MVW5 462 aa10.37□□□□□ -0.75
CLK3-220ENST00000567992 BECN2A8MW95 431 aa10.37□□□□□ -0.75
CLK3-220ENST00000567992 M0R296 226 aa10.37□□□□□ -0.75
CLK3-220ENST00000567992 ARNTLO00327 626 aa10.37□□□□□ -0.75
CLK3-220ENST00000567992 O00370 1275 aa10.37□□□□□ -0.75
CLK3-220ENST00000567992 OLFM2O95897 454 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms