RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 RTN3O95197 1032 aaPredicted RBP19.88■□□□□ 0.77
CLN3-227ENST00000567495 CD72P21854 359 aa19.88■□□□□ 0.77
CLN3-227ENST00000567495 TARSP26639 723 aaKnown RBP19.88■□□□□ 0.77
CLN3-227ENST00000567495 NDST1P52848 882 aa19.88■□□□□ 0.77
CLN3-227ENST00000567495 WDR44Q5JSH3 913 aa19.88■□□□□ 0.77
CLN3-227ENST00000567495 SPOPLQ6IQ16 392 aa19.88■□□□□ 0.77
CLN3-227ENST00000567495 CC2D1AQ6P1N0 951 aaPredicted RBP19.88■□□□□ 0.77
CLN3-227ENST00000567495 ACOT1Q86TX2 421 aa19.88■□□□□ 0.77
CLN3-227ENST00000567495 RALGPS2Q86X27 583 aaPredicted RBP19.88■□□□□ 0.77
CLN3-227ENST00000567495 GPIHBP1Q8IV16 184 aa19.88■□□□□ 0.77
CLN3-227ENST00000567495 C1orf210Q8IVY1 113 aa19.88■□□□□ 0.77
CLN3-227ENST00000567495 FAM3CQ92520 227 aa19.88■□□□□ 0.77
CLN3-227ENST00000567495 CEP63Q96MT8 703 aa19.88■□□□□ 0.77
CLN3-227ENST00000567495 SLITRK1Q96PX8 696 aa19.88■□□□□ 0.77
CLN3-227ENST00000567495 IER2Q9BTL4 223 aa19.88■□□□□ 0.77
CLN3-227ENST00000567495 MED10Q9BTT4 135 aa19.88■□□□□ 0.77
CLN3-227ENST00000567495 MMRN2Q9H8L6 949 aa19.88■□□□□ 0.77
CLN3-227ENST00000567495 DMAP1Q9NPF5 467 aaPredicted RBP19.88■□□□□ 0.77
CLN3-227ENST00000567495 CLDN5O00501 218 aa19.87■□□□□ 0.77
CLN3-227ENST00000567495 CKMP06732 381 aa19.87■□□□□ 0.77
CLN3-227ENST00000567495 HDCP19113 662 aa19.87■□□□□ 0.77
CLN3-227ENST00000567495 PMS1P54277 932 aaKnown RBP19.87■□□□□ 0.77
CLN3-227ENST00000567495 FAM35AQ86V20 835 aa19.87■□□□□ 0.77
CLN3-227ENST00000567495 NUP93Q8N1F7 819 aa19.87■□□□□ 0.77
CLN3-227ENST00000567495 PDZD8Q8NEN9 1154 aa19.87■□□□□ 0.77
CLN3-227ENST00000567495 NT5C1AQ9BXI3 368 aa19.87■□□□□ 0.77
CLN3-227ENST00000567495 SMG9Q9H0W8 520 aaKnown RBP19.87■□□□□ 0.77
CLN3-227ENST00000567495 APOBEC3GQ9HC16 384 aaKnown RBP19.87■□□□□ 0.77
CLN3-227ENST00000567495 TRPC7Q9HCX4 862 aa19.87■□□□□ 0.77
CLN3-227ENST00000567495 COMMD8Q9NX08 183 aa19.87■□□□□ 0.77
CLN3-227ENST00000567495 RAB20Q9NX57 234 aa19.87■□□□□ 0.77
CLN3-227ENST00000567495 MTF2Q9Y483 593 aaPredicted RBP19.87■□□□□ 0.77
CLN3-227ENST00000567495 ZNF840PA6NDX5 716 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 AMPD2Q01433 879 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 MORC3Q14149 939 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 PDGFRLQ15198 375 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 ITPRIPL2Q3MIP1 535 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 TCERG1LQ5VWI1 586 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 FRMD5Q7Z6J6 570 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 FILIP1Q7Z7B0 1213 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 FUKQ8N0W3 1084 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 KIAA1958Q8N8K9 716 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 TRIML1Q8N9V2 468 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 OVCA2Q8WZ82 227 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 ELMO3Q96BJ8 720 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 FAM83CQ9BQN1 747 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 GKN1Q9NS71 199 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 GCNT4Q9P109 453 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 ARHGAP26Q9UNA1 814 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 COQ4Q9Y3A0 265 aa19.86■□□□□ 0.77
CLN3-227ENST00000567495 SHISA7A6NL88 538 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 PROB1E7EW31 1015 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 CILPO75339 1184 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 TCF3P15923 654 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 YWHAQP27348 245 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 NBL1P41271 181 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 MRE11P49959 708 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 USP46P62068 366 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 TAF10Q12962 218 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 DCAF17Q5H9S7 520 aaPredicted RBP19.85■□□□□ 0.77
CLN3-227ENST00000567495 ISM2Q6H9L7 571 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 MAMSTRQ6ZN01 415 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 PAQR9Q6ZVX9 377 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 ZNF687Q8N1G0 1237 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 ZFYVE19Q96K21 471 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 HNRNPABQ99729 332 aaKnown RBP19.85■□□□□ 0.77
CLN3-227ENST00000567495 KRT82Q9NSB4 513 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 SPATA6Q9NWH7 488 aaPredicted RBP19.85■□□□□ 0.77
CLN3-227ENST00000567495 CCL26Q9Y258 94 aa19.85■□□□□ 0.77
CLN3-227ENST00000567495 TRIM49BA6NDI0 452 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 PPP1R3GB7ZBB8 358 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 SPECC1L-ADORA2AF8WAN1 911 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 LRRN2O75325 713 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 AP1G2O75843 785 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 CTHP32929 405 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 CACNA2D1P54289 1103 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 KLHL10Q6JEL2 608 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 TTI2Q6NXR4 508 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 ALYREFQ86V81 257 aaKnown RBP19.84■□□□□ 0.77
CLN3-227ENST00000567495 ARL14EPQ8N8R7 260 aaPredicted RBP19.84■□□□□ 0.77
CLN3-227ENST00000567495 SLC2A14Q8TDB8 520 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 NELFBQ8WX92 580 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 SEMA4DQ92854 862 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 CYP2S1Q96SQ9 504 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 KCNK16Q96T55 309 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 CSNK1G1Q9HCP0 422 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.84■□□□□ 0.776e-9■■■■■ 134.6
CLN3-227ENST00000567495 TMEM30AQ9NV96 361 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 GTSE1Q9NYZ3 720 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 IL37Q9NZH6 218 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 HMGXB4Q9UGU5 601 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 FBXO4Q9UKT5 387 aa19.84■□□□□ 0.77
CLN3-227ENST00000567495 NDRG2Q9UN36 371 aaKnown RBP19.84■□□□□ 0.77
CLN3-227ENST00000567495 C2orf78A6NCI8 922 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 PMM2O15305 246 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 LAMTOR5O43504 91 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 GNA14O95837 355 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 FAM200BP0CF97 657 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 CCDC130P13994 396 aa19.83■□□□□ 0.77
CLN3-227ENST00000567495 CD44P16070 742 aaKnown RBP19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms