RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 CEP295NLQ96MC4 621 aa19.56■□□□□ 0.72
CLN3-221ENST00000566057 ELOVL4Q9GZR5 314 aa19.56■□□□□ 0.72
CLN3-221ENST00000566057 TRPC7Q9HCX4 862 aa19.56■□□□□ 0.72
CLN3-221ENST00000566057 GKN1Q9NS71 199 aa19.56■□□□□ 0.72
CLN3-221ENST00000566057 HOOK1Q9UJC3 728 aaKnown RBP19.56■□□□□ 0.72
CLN3-221ENST00000566057 MRPS17Q9Y2R5 130 aaKnown RBP19.56■□□□□ 0.72
CLN3-221ENST00000566057 FAM186AA6NE01 2351 aa19.55■□□□□ 0.72
CLN3-221ENST00000566057 TRIM49BA6NDI0 452 aa19.55■□□□□ 0.72
CLN3-221ENST00000566057 KINO60870 393 aaKnown RBP19.55■□□□□ 0.72
CLN3-221ENST00000566057 CD44P16070 742 aaKnown RBP19.55■□□□□ 0.72
CLN3-221ENST00000566057 PTPRZ1P23471 2315 aaPredicted RBP19.55■□□□□ 0.72
CLN3-221ENST00000566057 CCNE1P24864 410 aa19.55■□□□□ 0.72
CLN3-221ENST00000566057 NBL1P41271 181 aa19.55■□□□□ 0.72
CLN3-221ENST00000566057 KPNA1P52294 538 aaPredicted RBP19.55■□□□□ 0.72
CLN3-221ENST00000566057 NDST1P52848 882 aa19.55■□□□□ 0.72
CLN3-221ENST00000566057 MLLT6P55198 1093 aaPredicted RBP19.55■□□□□ 0.72
CLN3-221ENST00000566057 NOP14P78316 857 aaKnown RBP19.55■□□□□ 0.72
CLN3-221ENST00000566057 FRMD5Q7Z6J6 570 aa19.55■□□□□ 0.72
CLN3-221ENST00000566057 ZC3H3Q8IXZ2 948 aaKnown RBP19.55■□□□□ 0.72
CLN3-221ENST00000566057 ARL14EPQ8N8R7 260 aaPredicted RBP19.55■□□□□ 0.72
CLN3-221ENST00000566057 KCNK16Q96T55 309 aa19.55■□□□□ 0.72
CLN3-221ENST00000566057 TTLL2Q9BWV7 592 aa19.55■□□□□ 0.72
CLN3-221ENST00000566057 TMEM8AQ9HCN3 771 aa19.55■□□□□ 0.72
CLN3-221ENST00000566057 GCNT4Q9P109 453 aa19.55■□□□□ 0.72
CLN3-221ENST00000566057 MAN1B1Q9UKM7 699 aa19.55■□□□□ 0.72
CLN3-221ENST00000566057 FRYLO94915 3013 aa19.55■□□□□ 0.72
CLN3-221ENST00000566057 PROB1E7EW31 1015 aa19.54■□□□□ 0.72
CLN3-221ENST00000566057 BMP6P22004 513 aa19.54■□□□□ 0.72
CLN3-221ENST00000566057 GTF2H1P32780 548 aa19.54■□□□□ 0.72
CLN3-221ENST00000566057 RPS9P46781 194 aaKnown RBP19.54■□□□□ 0.72
CLN3-221ENST00000566057 PLCB2Q00722 1185 aa19.54■□□□□ 0.72
CLN3-221ENST00000566057 ZNF268Q14587 947 aaPredicted RBP19.54■□□□□ 0.72
CLN3-221ENST00000566057 FUKQ8N0W3 1084 aa19.54■□□□□ 0.72
CLN3-221ENST00000566057 CRYBG2Q8N1P7 616 aa19.54■□□□□ 0.72
CLN3-221ENST00000566057 C12orf29Q8N999 325 aa19.54■□□□□ 0.72
CLN3-221ENST00000566057 SEMA4DQ92854 862 aa19.54■□□□□ 0.72
CLN3-221ENST00000566057 TNIP3Q96KP6 325 aa19.54■□□□□ 0.72
CLN3-221ENST00000566057 FAM83CQ9BQN1 747 aa19.54■□□□□ 0.72
CLN3-221ENST00000566057 MED10Q9BTT4 135 aa19.54■□□□□ 0.72
CLN3-221ENST00000566057 SPATA6Q9NWH7 488 aaPredicted RBP19.54■□□□□ 0.72
CLN3-221ENST00000566057 THG1LQ9NWX6 298 aaKnown RBP19.54■□□□□ 0.72
CLN3-221ENST00000566057 ZNF292O60281 2723 aa19.54■□□□□ 0.72
CLN3-221ENST00000566057 TRAV19A0A0A6YYK7 116 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 OTOL1A6NHN0 477 aaPredicted RBP19.53■□□□□ 0.72
CLN3-221ENST00000566057 NCAM2O15394 837 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 USP17L7P0C7H9 530 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 SP9P0CG40 484 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 EPB41P11171 864 aaKnown RBP19.53■□□□□ 0.72
CLN3-221ENST00000566057 CCDC130P13994 396 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 FKBP3Q00688 224 aaKnown RBP19.53■□□□□ 0.72
CLN3-221ENST00000566057 WDR44Q5JSH3 913 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 KRT39Q6A163 491 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 TRIM68Q6AZZ1 485 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 TXNDC11Q6PKC3 985 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 FAM35AQ86V20 835 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 UNC93AQ86WB7 457 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 TWNKQ96RR1 684 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 TSG101Q99816 390 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 C8orf33Q9H7E9 229 aaPredicted RBP19.53■□□□□ 0.72
CLN3-221ENST00000566057 KIF9Q9HAQ2 790 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 LMAN1LQ9HAT1 526 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 HPS4Q9NQG7 708 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 TRPM5Q9NZQ8 1165 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 MYOFQ9NZM1 2061 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 CFAP54Q96N23 3096 aa19.53■□□□□ 0.72
CLN3-221ENST00000566057 ZNF840PA6NDX5 716 aa19.52■□□□□ 0.72
CLN3-221ENST00000566057 SPECC1L-ADORA2AF8WAN1 911 aa19.52■□□□□ 0.72
CLN3-221ENST00000566057 CKMP06732 381 aa19.52■□□□□ 0.72
CLN3-221ENST00000566057 CHRNB1P11230 501 aa19.52■□□□□ 0.72
CLN3-221ENST00000566057 HDCP19113 662 aa19.52■□□□□ 0.72
CLN3-221ENST00000566057 CTHP32929 405 aa19.52■□□□□ 0.72
CLN3-221ENST00000566057 MAGEA9P43362 315 aa19.52■□□□□ 0.72
CLN3-221ENST00000566057 INCA1Q0VD86 236 aa19.52■□□□□ 0.72
CLN3-221ENST00000566057 IFRD2Q12894 506 aaPredicted RBP19.52■□□□□ 0.72
CLN3-221ENST00000566057 TAF10Q12962 218 aa19.52■□□□□ 0.72
CLN3-221ENST00000566057 NUP93Q8N1F7 819 aa19.52■□□□□ 0.72
CLN3-221ENST00000566057 SCAMP5Q8TAC9 235 aa19.52■□□□□ 0.72
CLN3-221ENST00000566057 SLC2A14Q8TDB8 520 aa19.52■□□□□ 0.72
CLN3-221ENST00000566057 GTPBP4Q9BZE4 634 aaKnown RBP19.52■□□□□ 0.72
CLN3-221ENST00000566057 IMPG2Q9BZV3 1241 aa19.52■□□□□ 0.72
CLN3-221ENST00000566057 NIF3L1Q9GZT8 377 aa19.52■□□□□ 0.72
CLN3-221ENST00000566057 EBF3Q9H4W6 596 aa19.52■□□□□ 0.72
CLN3-221ENST00000566057 EP300Q09472 2414 aaPredicted RBP19.52■□□□□ 0.71
CLN3-221ENST00000566057 MYO16Q9Y6X6 1858 aa19.52■□□□□ 0.71
CLN3-221ENST00000566057 PPP1R3GB7ZBB8 358 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 TNFRSF10BO14763 440 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 SLC16A3O15427 465 aaKnown RBP19.51■□□□□ 0.71
CLN3-221ENST00000566057 AP1G2O75843 785 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 BEST1O76090 585 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 ZXDBP98169 803 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 LRRC63Q05C16 580 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 MTAPQ13126 283 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 ZNF77Q15935 545 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 ITPRIPL2Q3MIP1 535 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 CBWD6Q4V339 395 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 CBWD3Q5JTY5 395 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 CBWD5Q5RIA9 395 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 RALGPS2Q86X27 583 aaPredicted RBP19.51■□□□□ 0.71
CLN3-221ENST00000566057 TTC16Q8NEE8 873 aa19.51■□□□□ 0.71
CLN3-221ENST00000566057 ZMIZ2Q8NF64 920 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms