RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ATRIPQ8WXE1 791 aa22.06■■□□□ 1.12
CLN3-219ENST00000565778 MMRN2Q9H8L6 949 aa22.06■■□□□ 1.12
CLN3-219ENST00000565778 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.06■■□□□ 1.126e-9■■■■■ 134.6
CLN3-219ENST00000565778 TRIM49P0CI25 452 aa22.05■■□□□ 1.12
CLN3-219ENST00000565778 TRIM49CP0CI26 452 aa22.05■■□□□ 1.12
CLN3-219ENST00000565778 GCLMP48507 274 aa22.05■■□□□ 1.12
CLN3-219ENST00000565778 CACNA2D1P54289 1103 aa22.05■■□□□ 1.12
CLN3-219ENST00000565778 NOP14P78316 857 aaKnown RBP22.05■■□□□ 1.12
CLN3-219ENST00000565778 IFRD2Q12894 506 aaPredicted RBP22.05■■□□□ 1.12
CLN3-219ENST00000565778 PPP2R5DQ14738 602 aa22.05■■□□□ 1.12
CLN3-219ENST00000565778 DGKKQ5KSL6 1271 aa22.05■■□□□ 1.12
CLN3-219ENST00000565778 SPOPLQ6IQ16 392 aa22.05■■□□□ 1.12
CLN3-219ENST00000565778 ACOT1Q86TX2 421 aa22.05■■□□□ 1.12
CLN3-219ENST00000565778 IER2Q9BTL4 223 aa22.05■■□□□ 1.12
CLN3-219ENST00000565778 TTLL2Q9BWV7 592 aa22.05■■□□□ 1.12
CLN3-219ENST00000565778 RBM12Q9NTZ6 932 aaKnown RBP22.05■■□□□ 1.12
CLN3-219ENST00000565778 GCNT4Q9P109 453 aa22.05■■□□□ 1.12
CLN3-219ENST00000565778 USP34Q70CQ2 3546 aa22.05■■□□□ 1.12
CLN3-219ENST00000565778 ATP8B3O60423 1300 aa22.05■■□□□ 1.12
CLN3-219ENST00000565778 CACNA1IQ9P0X4 2223 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 KINO60870 393 aaKnown RBP22.04■■□□□ 1.12
CLN3-219ENST00000565778 SMC2O95347 1197 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 ASS1P00966 412 aaKnown RBP22.04■■□□□ 1.12
CLN3-219ENST00000565778 PPP3CCP48454 512 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 PDE6CP51160 858 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 PPP3CAQ08209 521 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 MTF1Q14872 753 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 PDGFRLQ15198 375 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 MAMSTRQ6ZN01 415 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 NUP93Q8N1F7 819 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 ENGASEQ8NFI3 743 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 RIN3Q8TB24 985 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 EEF2KMTQ96G04 330 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 GSDMAQ96QA5 445 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 KCNK16Q96T55 309 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 IMPG2Q9BZV3 1241 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 HPS4Q9NQG7 708 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 ZSCAN32Q9NX65 697 aa22.04■■□□□ 1.12
CLN3-219ENST00000565778 DUS2Q9NX74 493 aaKnown RBP22.04■■□□□ 1.12
CLN3-219ENST00000565778 HOOK1Q9UJC3 728 aaKnown RBP22.04■■□□□ 1.12
CLN3-219ENST00000565778 NUP210Q8TEM1 1887 aaPredicted RBP22.04■■□□□ 1.12
CLN3-219ENST00000565778 ZNF840PA6NDX5 716 aa22.03■■□□□ 1.12
CLN3-219ENST00000565778 CETN3O15182 167 aa22.03■■□□□ 1.12
CLN3-219ENST00000565778 ARSAP15289 507 aa22.03■■□□□ 1.12
CLN3-219ENST00000565778 PRCPP42785 496 aa22.03■■□□□ 1.12
CLN3-219ENST00000565778 CXCL12P48061 93 aa22.03■■□□□ 1.12
CLN3-219ENST00000565778 CCR3P51677 355 aa22.03■■□□□ 1.12
CLN3-219ENST00000565778 NDST1P52848 882 aa22.03■■□□□ 1.12
CLN3-219ENST00000565778 AMPD2Q01433 879 aa22.03■■□□□ 1.12
CLN3-219ENST00000565778 TAF10Q12962 218 aa22.03■■□□□ 1.12
CLN3-219ENST00000565778 EDRF1Q3B7T1 1238 aa22.03■■□□□ 1.12
CLN3-219ENST00000565778 ZNF658Q5TYW1 1059 aaPredicted RBP22.03■■□□□ 1.12
CLN3-219ENST00000565778 SH3RF2Q8TEC5 729 aa22.03■■□□□ 1.12
CLN3-219ENST00000565778 SLITRK1Q96PX8 696 aa22.03■■□□□ 1.12
CLN3-219ENST00000565778 PRMT8Q9NR22 394 aaPredicted RBP22.03■■□□□ 1.12
CLN3-219ENST00000565778 TMEM30AQ9NV96 361 aa22.03■■□□□ 1.12
CLN3-219ENST00000565778 PCDHGA2Q9Y5H1 932 aa22.03■■□□□ 1.12
CLN3-219ENST00000565778 PCDHA5Q9Y5H7 936 aa22.03■■□□□ 1.12
CLN3-219ENST00000565778 F5P12259 2224 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 OTOL1A6NHN0 477 aaPredicted RBP22.02■■□□□ 1.12
CLN3-219ENST00000565778 RTN3O95197 1032 aaPredicted RBP22.02■■□□□ 1.12
CLN3-219ENST00000565778 PFKLP17858 780 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 TRIM21P19474 475 aaKnown RBP22.02■■□□□ 1.12
CLN3-219ENST00000565778 YWHAQP27348 245 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 IFNAR2P48551 515 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 NRLP54845 237 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 ENPEPQ07075 957 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 ORC1Q13415 861 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 ZCWPW2Q504Y3 356 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 PAQR9Q6ZVX9 377 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 FAM35AQ86V20 835 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 UNC93AQ86WB7 457 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 CRYBG2Q8N1P7 616 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 SPEM1Q8N4L4 309 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 CCDC150Q8NCX0 1101 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 TAS1R2Q8TE23 839 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 OSCP1Q8WVF1 389 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 ERCC4Q92889 916 aaPredicted RBP22.02■■□□□ 1.12
CLN3-219ENST00000565778 SMARCE1Q969G3 411 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 COL4A2P08572 1712 aa22.02■■□□□ 1.12
CLN3-219ENST00000565778 AP1G2O75843 785 aa22.01■■□□□ 1.11
CLN3-219ENST00000565778 GRSF1Q12849 480 aaKnown RBP eCLIP22.01■■□□□ 1.11
CLN3-219ENST00000565778 GAS6Q14393 721 aa22.01■■□□□ 1.11
CLN3-219ENST00000565778 ZNF77Q15935 545 aa22.01■■□□□ 1.11
CLN3-219ENST00000565778 CPA6Q8N4T0 437 aa22.01■■□□□ 1.11
CLN3-219ENST00000565778 FBXO32Q969P5 355 aa22.01■■□□□ 1.11
CLN3-219ENST00000565778 SMARCD1Q96GM5 515 aa22.01■■□□□ 1.11
CLN3-219ENST00000565778 TIGD1Q96MW7 591 aa22.01■■□□□ 1.11
CLN3-219ENST00000565778 TSG101Q99816 390 aa22.01■■□□□ 1.11
CLN3-219ENST00000565778 FAM126AQ9BYI3 521 aaPredicted RBP22.01■■□□□ 1.11
CLN3-219ENST00000565778 RNF38Q9H0F5 515 aa22.01■■□□□ 1.11
CLN3-219ENST00000565778 TMEM8AQ9HCN3 771 aa22.01■■□□□ 1.11
CLN3-219ENST00000565778 CHORDC1Q9UHD1 332 aaPredicted RBP22.01■■□□□ 1.11
CLN3-219ENST00000565778 ARHGAP26Q9UNA1 814 aa22.01■■□□□ 1.11
CLN3-219ENST00000565778 WNT6Q9Y6F9 365 aa22.01■■□□□ 1.11
CLN3-219ENST00000565778 MYO15AQ9UKN7 3530 aa22■■□□□ 1.11
CLN3-219ENST00000565778 EPB41P11171 864 aaKnown RBP22■■□□□ 1.11
CLN3-219ENST00000565778 GTF2H1P32780 548 aa22■■□□□ 1.11
CLN3-219ENST00000565778 ASPAP45381 313 aa22■■□□□ 1.11
CLN3-219ENST00000565778 SATB1Q01826 763 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms