RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 STX17P56962 302 aa14.23□□□□□ -0.13
CLK3-216ENST00000564468 YWHAEP62258 255 aaKnown RBP14.23□□□□□ -0.13
CLK3-216ENST00000564468 SLC44A4Q53GD3 710 aa14.23□□□□□ -0.13
CLK3-216ENST00000564468 STXBP5Q5T5C0 1151 aa14.23□□□□□ -0.13
CLK3-216ENST00000564468 POTEHQ6S545 545 aa14.23□□□□□ -0.13
CLK3-216ENST00000564468 VITQ6UXI7 678 aa14.23□□□□□ -0.13
CLK3-216ENST00000564468 MON1AQ86VX9 555 aa14.23□□□□□ -0.13
CLK3-216ENST00000564468 CMTM8Q8IZV2 173 aa14.23□□□□□ -0.13
CLK3-216ENST00000564468 CELF5Q8N6W0 485 aaKnown RBP14.23□□□□□ -0.13
CLK3-216ENST00000564468 ELMO3Q96BJ8 720 aa14.23□□□□□ -0.13
CLK3-216ENST00000564468 KIF9Q9HAQ2 790 aa14.23□□□□□ -0.13
CLK3-216ENST00000564468 APOBEC3GQ9HC16 384 aaKnown RBP14.23□□□□□ -0.13
CLK3-216ENST00000564468 DMAP1Q9NPF5 467 aaPredicted RBP14.23□□□□□ -0.13
CLK3-216ENST00000564468 TRPV5Q9NQA5 729 aa14.23□□□□□ -0.13
CLK3-216ENST00000564468 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.23□□□□□ -0.135e-8■■■■■ 188.1
CLK3-216ENST00000564468 LMBRD1Q9NUN5 540 aa14.23□□□□□ -0.13
CLK3-216ENST00000564468 TRPM5Q9NZQ8 1165 aa14.23□□□□□ -0.13
CLK3-216ENST00000564468 DACH1Q9UI36 760 aa14.23□□□□□ -0.13
CLK3-216ENST00000564468 DMDP11532 3685 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 KRBA1A5PL33 1030 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 CHADO15335 359 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 AOC1P19801 751 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 GDI1P31150 447 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 NBL1P41271 181 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 FMO5P49326 533 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 MARSP56192 900 aaKnown RBP14.22□□□□□ -0.13
CLK3-216ENST00000564468 STARD6P59095 220 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 MLF2Q15773 248 aaPredicted RBP14.22□□□□□ -0.13
CLK3-216ENST00000564468 CBWD6Q4V339 395 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 ARHGAP29Q52LW3 1261 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 CBWD3Q5JTY5 395 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 CBWD5Q5RIA9 395 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 TMEM150AQ86TG1 271 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 FAM35AQ86V20 835 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 NUP93Q8N1F7 819 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 MAB21L3Q8N8X9 362 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 SEMA4DQ92854 862 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 NKD2Q969F2 451 aaPredicted RBP14.22□□□□□ -0.13
CLK3-216ENST00000564468 SLITRK1Q96PX8 696 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 TTLL2Q9BWV7 592 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 SRRTQ9BXP5 876 aaKnown RBP14.22□□□□□ -0.13
CLK3-216ENST00000564468 SLC46A2Q9BY10 475 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 ZNF518BQ9C0D4 1074 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 THG1LQ9NWX6 298 aaKnown RBP14.22□□□□□ -0.13
CLK3-216ENST00000564468 COMMD8Q9NX08 183 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 KIF26AQ9ULI4 1882 aaPredicted RBP14.22□□□□□ -0.13
CLK3-216ENST00000564468 PATJQ8NI35 1801 aa14.22□□□□□ -0.13
CLK3-216ENST00000564468 MYO16Q9Y6X6 1858 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 TRAV19A0A0A6YYK7 116 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 PRR23AA6NEV1 266 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 CLDN5O00501 218 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 CILPO75339 1184 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 AP1G2O75843 785 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 USP17L7P0C7H9 530 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 GLULP15104 373 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 CD58P19256 250 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 TBXAS1P24557 533 aaPredicted RBP14.21□□□□□ -0.13
CLK3-216ENST00000564468 PLCB2Q00722 1185 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 FCHO2Q0JRZ9 810 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 GRM2Q14416 872 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 TPD52L1Q16890 204 aaPredicted RBP14.21□□□□□ -0.13
CLK3-216ENST00000564468 ASCL5Q7RTU5 278 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 FUKQ8N0W3 1084 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 STKLD1Q8NE28 680 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 PDZD8Q8NEN9 1154 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 BPIFB1Q8TDL5 484 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 CSGALNACT1Q8TDX6 532 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 NELL2Q99435 816 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 TBC1D17Q9HA65 648 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 TDP1Q9NUW8 608 aa14.21□□□□□ -0.13
CLK3-216ENST00000564468 MRPS17Q9Y2R5 130 aaKnown RBP14.21□□□□□ -0.13
CLK3-216ENST00000564468 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.21□□□□□ -0.13
CLK3-216ENST00000564468 MAN2B1O00754 1011 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 FAM200BP0CF97 657 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 NPR3P17342 541 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 YWHAQP27348 245 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 MLLT6P55198 1093 aaPredicted RBP14.2□□□□□ -0.14
CLK3-216ENST00000564468 KCNH2Q12809 1159 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 ZNF268Q14587 947 aaPredicted RBP14.2□□□□□ -0.14
CLK3-216ENST00000564468 CT47A1Q5JQC4 288 aaPredicted RBP14.2□□□□□ -0.14
CLK3-216ENST00000564468 TXNDC8Q6A555 127 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 C1orf228Q6PIY5 440 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 PAQR9Q6ZVX9 377 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 TRIM59Q8IWR1 403 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 SLC2A14Q8TDB8 520 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 OVCA2Q8WZ82 227 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 CYFIP2Q96F07 1278 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 MSANTD3Q96H12 275 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 NT5C1BQ96P26 610 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 HNRNPABQ99729 332 aaKnown RBP14.2□□□□□ -0.14
CLK3-216ENST00000564468 OSBPL6Q9BZF3 934 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 CSNK1G1Q9HCP0 422 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 TRPC7Q9HCX4 862 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 KRT82Q9NSB4 513 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 CISHQ9NSE2 258 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 FAM49BQ9NUQ9 324 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 HMGXB4Q9UGU5 601 aa14.2□□□□□ -0.14
CLK3-216ENST00000564468 KANSL1LA0AUZ9 987 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 NCAM2O15394 837 aa14.19□□□□□ -0.14
CLK3-216ENST00000564468 TADA3O75528 432 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms