RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 LEFTY2O00292 366 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 GABRDO14764 452 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 CBFA2T3O75081 653 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 PPP1R37O75864 691 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 CKMP06732 381 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 USP17L7P0C7H9 530 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 GABRG2P18507 467 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 PAX3P23760 479 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 MATR3P43243 847 aaKnown RBP eCLIP11.14□□□□□ -0.63
SF3B3-204ENST00000563739 MRPS21P82921 87 aaKnown RBP11.14□□□□□ -0.63
SF3B3-204ENST00000563739 ATP2C1P98194 919 aaPredicted RBP11.14□□□□□ -0.63
SF3B3-204ENST00000563739 GTF2BQ00403 316 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 LMAN2Q12907 356 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 CFAP221Q4G0U5 840 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 LYSMD4Q5XG99 296 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 CC2D1AQ6P1N0 951 aaPredicted RBP11.14□□□□□ -0.63
SF3B3-204ENST00000563739 LPCAT2Q7L5N7 544 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 FILIP1Q7Z7B0 1213 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 CD302Q8IX05 232 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 ETFBKMTQ8IXQ9 262 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 MINDY1Q8N5J2 469 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 MDM1Q8TC05 714 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 ADAM32Q8TC27 787 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 KBTBD7Q8WVZ9 684 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 WBP2Q969T9 261 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 BICD1Q96G01 975 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 P2RY11Q96G91 374 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 ZFRQ96KR1 1074 aaKnown RBP11.14□□□□□ -0.63
SF3B3-204ENST00000563739 STRA6Q9BX79 667 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 RNF38Q9H0F5 515 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 ASB7Q9H672 318 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 CRTAC1Q9NQ79 661 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 DNAAF2Q9NVR5 837 aaKnown RBP11.14□□□□□ -0.63
SF3B3-204ENST00000563739 TOR4AQ9NXH8 423 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 GTF3C4Q9UKN8 822 aa11.14□□□□□ -0.63
SF3B3-204ENST00000563739 ASXL3Q9C0F0 2248 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 PTPRJQ12913 1337 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 TRAV19A0A0A6YYK7 116 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 IGHV1OR15-9A0A0B4J2B8 117 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 A0A1W2PQF6 199 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 K7ENM7 598 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 TRIM24O15164 1050 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 ATP2C2O75185 946 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 C1QL1O75973 258 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 NFATC1O95644 943 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 TIE1P35590 1138 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 SMTNP53814 917 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 CACNA2D1P54289 1103 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 AMPD2Q01433 879 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 KDSRQ06136 332 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 DHCR24Q15392 516 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 KYAT1Q16773 422 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 FAM171BQ6P995 826 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 RHBDF2Q6PJF5 856 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 CCNI2Q6ZMN8 369 aaPredicted RBP11.13□□□□□ -0.63
SF3B3-204ENST00000563739 SLCO6A1Q86UG4 719 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 MARCH9Q86YJ5 346 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 DCP1BQ8IZD4 617 aaKnown RBP11.13□□□□□ -0.63
SF3B3-204ENST00000563739 DEFB119Q8N690 84 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 PNPLA1Q8N8W4 532 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 TTC16Q8NEE8 873 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 WHAMMQ8TF30 809 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 ADAMTS14Q8WXS8 1223 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 TTLL2Q9BWV7 592 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 NUSAP1Q9BXS6 441 aaKnown RBP11.13□□□□□ -0.63
SF3B3-204ENST00000563739 TRIM9Q9C026 710 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 ODF2LQ9ULJ1 636 aa11.13□□□□□ -0.63
SF3B3-204ENST00000563739 PTPRQQ9UMZ3 2332 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 TCRBV21S2A2A0A5A6 115 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 SH3BP5O60239 455 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 DKK1O94907 266 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 KAT7O95251 611 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 OAS1P00973 400 aaKnown RBP11.12□□□□□ -0.63
SF3B3-204ENST00000563739 SERPINF2P08697 491 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 FTH1P19P0C7X4 201 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 POLR2BP30876 1174 aaKnown RBP11.12□□□□□ -0.63
SF3B3-204ENST00000563739 HOXD12P35452 270 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 SLC7A9P82251 487 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 BNC1Q01954 994 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 GRIN1Q05586 938 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 KCNA1Q09470 495 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 TAF12Q16514 161 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 SPDYCQ5MJ68 293 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 METTL23Q86XA0 190 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 ADGRG2Q8IZP9 1017 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 THEM5Q8N1Q8 247 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 BAHD1Q8TBE0 780 aaPredicted RBP11.12□□□□□ -0.63
SF3B3-204ENST00000563739 HMGB4Q8WW32 186 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 ACBD6Q9BR61 282 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 FGFBP2Q9BYJ0 223 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 SLC32A1Q9H598 525 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 DDX43Q9NXZ2 648 aaKnown RBP11.12□□□□□ -0.63
SF3B3-204ENST00000563739 KCND2Q9NZV8 630 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 CALCOCO1Q9P1Z2 691 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 LARSQ9P2J5 1176 aaKnown RBP11.12□□□□□ -0.63
SF3B3-204ENST00000563739 UXTQ9UBK9 157 aaPredicted RBP11.12□□□□□ -0.63
SF3B3-204ENST00000563739 SLC6A14Q9UN76 642 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 RAXQ9Y2V3 346 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 STK24Q9Y6E0 443 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 CKAP5Q14008 2032 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms