RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 DNAJC24Q6P3W2 148 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 SPATA2LQ8IUW3 424 aaPredicted RBP10.72□□□□□ -0.69
SMG1-208ENST00000563448 FEZF2Q8TBJ5 459 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 RIN2Q8WYP3 895 aaPredicted RBP10.72□□□□□ -0.69
SMG1-208ENST00000563448 PIK3R5Q8WYR1 880 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 CALR3Q96L12 384 aaKnown RBP10.72□□□□□ -0.69
SMG1-208ENST00000563448 HSFY1Q96LI6 401 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 TRIM7Q9C029 511 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 MRPL47Q9HD33 250 aaKnown RBP10.72□□□□□ -0.69
SMG1-208ENST00000563448 CYLDQ9NQC7 956 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 PARVAQ9NVD7 372 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 MTRRQ9UBK8 725 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 SCINQ9Y6U3 715 aa10.72□□□□□ -0.69
SMG1-208ENST00000563448 DENND4CQ5VZ89 1909 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 GRXCR1A8MXD5 290 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 HHLA1C9JL84 531 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 ENC1O14682 589 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 ADAM12O43184 909 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 PAPSS1O43252 624 aaPredicted RBP10.71□□□□□ -0.69
SMG1-208ENST00000563448 FGF18O76093 207 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 VNN2O95498 520 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 ATP1A1P05023 1023 aaKnown RBP10.71□□□□□ -0.69
SMG1-208ENST00000563448 LCP1P13796 627 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 CYP2F1P24903 491 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 PPM1AP35813 382 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 ARPP19P56211 112 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 RPL7AP62424 266 aaKnown RBP10.71□□□□□ -0.69
SMG1-208ENST00000563448 PSMD5Q16401 504 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 FAM109BQ6ICB4 259 aaPredicted RBP10.71□□□□□ -0.69
SMG1-208ENST00000563448 OR6B2Q6IFH4 312 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 C4orf50Q6ZRC1 276 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 DAAM2Q86T65 1068 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 SCUBE3Q8IX30 993 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 FBXO22Q8NEZ5 403 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 KIF18AQ8NI77 898 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 CLEC4CQ8WTT0 213 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 KCTD13Q8WZ19 329 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 PIWIL1Q96J94 861 aaKnown RBP10.71□□□□□ -0.69
SMG1-208ENST00000563448 RNPC3Q96LT9 517 aaKnown RBP10.71□□□□□ -0.69
SMG1-208ENST00000563448 NAPGQ99747 312 aaPredicted RBP10.71□□□□□ -0.69
SMG1-208ENST00000563448 SELENOOQ9BVL4 669 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 OXCT2Q9BYC2 517 aaPredicted RBP10.71□□□□□ -0.69
SMG1-208ENST00000563448 UBXN6Q9BZV1 441 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 ABCB6Q9NP58 842 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 ANAPC7Q9UJX3 599 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 BACE2Q9Y5Z0 518 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 CDY1Q9Y6F8 540 aa10.71□□□□□ -0.69
SMG1-208ENST00000563448 OBSL1O75147 1896 aa10.71□□□□□ -0.7
SMG1-208ENST00000563448 CTAGE9A4FU28 777 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 TMEM191CA6NGB0 347 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 SIGLEC16A6NMB1 481 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 C2CD2LO14523 706 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 NCK2O43639 380 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 FTCDO95954 541 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 MYOGP15173 224 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 RPL17P18621 184 aaKnown RBP10.7□□□□□ -0.7
SMG1-208ENST00000563448 ACADSBP45954 432 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 GLUD2P49448 558 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 SLC8A3P57103 927 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 GPR17Q13304 367 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 MESDQ14696 234 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 NFE2Q16621 373 aaPredicted RBP10.7□□□□□ -0.7
SMG1-208ENST00000563448 PTPROQ16827 1216 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 RAB41Q5JT25 222 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 MEI1Q5TIA1 1274 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 C11orf63Q6NUN7 778 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 OLFML1Q6UWY5 402 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 RNF19BQ6ZMZ0 732 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 GPRIN1Q7Z2K8 1008 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 NT5DC3Q86UY8 548 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 CPNE8Q86YQ8 564 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 KLHL23Q8NBE8 558 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 JOSD2Q8TAC2 188 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 KHSRPQ92945 711 aaKnown RBP eCLIP10.7□□□□□ -0.78e-9■■■■□ 21.5
SMG1-208ENST00000563448 PGLYRP2Q96PD5 576 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 MCEEQ96PE7 176 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 MIS12Q9H081 205 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 METTL5Q9NRN9 209 aaKnown RBP10.7□□□□□ -0.7
SMG1-208ENST00000563448 ABI2Q9NYB9 513 aaPredicted RBP10.7□□□□□ -0.7
SMG1-208ENST00000563448 PACSIN2Q9UNF0 486 aaPredicted RBP10.7□□□□□ -0.7
SMG1-208ENST00000563448 JRKLQ9Y4A0 524 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 HYOU1Q9Y4L1 999 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 COL4A4P53420 1690 aaPredicted RBP10.7□□□□□ -0.7
SMG1-208ENST00000563448 ANAPC1Q9H1A4 1944 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 WDR27A2RRH5 827 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 MTMR11A4FU01 709 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 LINC01553A4QN01 128 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 TMEM110-MUSTN1A8MSY1 372 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 ARHGEF15O94989 841 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 KRT3P12035 628 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 CPB1P15086 417 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 RFC1P35251 1148 aaPredicted RBP10.7□□□□□ -0.7
SMG1-208ENST00000563448 BMPR1AP36894 532 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 NDUFV1P49821 464 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 SNX16P57768 344 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 SLC6A3Q01959 620 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 OGDHQ02218 1023 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 ZNF252P-AS1Q0IIN9 211 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 CFAP221Q4G0U5 840 aa10.7□□□□□ -0.7
SMG1-208ENST00000563448 FAM102AQ5T9C2 384 aaPredicted RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms