RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SCN4BQ8IWT1 228 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 TCEAL8Q8IYN2 117 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 CCDC170Q8IYT3 715 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 CPA5Q8WXQ8 436 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 SEPT5Q99719 369 aaPredicted RBP17.53■□□□□ 0.4
VPS4A-202ENST00000562754 CYP4F11Q9HBI6 524 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 TJP2Q9UDY2 1190 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 NAGPAQ9UK23 515 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 YIPF1Q9Y548 306 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 CEP83Q9Y592 693 aa17.53■□□□□ 0.4
VPS4A-202ENST00000562754 PRRC2BQ5JSZ5 2229 aaKnown RBP17.52■□□□□ 0.4
VPS4A-202ENST00000562754 TMCO5BA8MYB1 307 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 NDUFA10O95299 355 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 LCA5LO95447 670 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 EPCAMP16422 314 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 ATF6P18850 670 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 CYLC1P35663 651 aaPredicted RBP17.52■□□□□ 0.4
VPS4A-202ENST00000562754 GRIK1P39086 918 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 NRIP1P48552 1158 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 ADGRE1Q14246 886 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 DDR2Q16832 855 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 MGAT5BQ3V5L5 792 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 ALKBH5Q6P6C2 394 aaKnown RBP17.52■□□□□ 0.4
VPS4A-202ENST00000562754 RBM23Q86U06 439 aaKnown RBP17.52■□□□□ 0.4
VPS4A-202ENST00000562754 PIGZQ86VD9 579 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 STKLD1Q8NE28 680 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 C8orf48Q96LL4 319 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 CPXM1Q96SM3 734 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 SLC4A5Q9BY07 1137 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 HSFX1Q9UBD0 423 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 MAFFQ9ULX9 164 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 REXO2Q9Y3B8 237 aaKnown RBP17.52■□□□□ 0.4
VPS4A-202ENST00000562754 INSL5Q9Y5Q6 135 aa17.52■□□□□ 0.4
VPS4A-202ENST00000562754 EPN1Q9Y6I3 576 aaPredicted RBP17.52■□□□□ 0.4
VPS4A-202ENST00000562754 MYO16Q9Y6X6 1858 aa17.52■□□□□ 0.39
VPS4A-202ENST00000562754 EIF3CLB5ME19 914 aaKnown RBP17.51■□□□□ 0.39
VPS4A-202ENST00000562754 PRRG1O14668 218 aa17.51■□□□□ 0.39
VPS4A-202ENST00000562754 TRIM66O15016 1216 aa17.51■□□□□ 0.39
VPS4A-202ENST00000562754 ARHGAP6O43182 974 aa17.51■□□□□ 0.39
VPS4A-202ENST00000562754 GZMAP12544 262 aa17.51■□□□□ 0.39
VPS4A-202ENST00000562754 GTF2F1P35269 517 aaKnown RBP eCLIP17.51■□□□□ 0.39
VPS4A-202ENST00000562754 RPL34P49207 117 aaKnown RBP17.51■□□□□ 0.39
VPS4A-202ENST00000562754 PTP4A2Q12974 167 aa17.51■□□□□ 0.39
VPS4A-202ENST00000562754 CCDC122Q5T0U0 273 aa17.51■□□□□ 0.39
VPS4A-202ENST00000562754 ACAD10Q6JQN1 1059 aa17.51■□□□□ 0.39
VPS4A-202ENST00000562754 TOGARAM2Q6ZUX3 1019 aa17.51■□□□□ 0.39
VPS4A-202ENST00000562754 MON1BQ7L1V2 547 aa17.51■□□□□ 0.39
VPS4A-202ENST00000562754 PHF13Q86YI8 300 aaPredicted RBP17.51■□□□□ 0.39
VPS4A-202ENST00000562754 KREMEN2Q8NCW0 462 aa17.51■□□□□ 0.39
VPS4A-202ENST00000562754 ACRBPQ8NEB7 543 aa17.51■□□□□ 0.39
VPS4A-202ENST00000562754 VN1R2Q8NFZ6 395 aa17.51■□□□□ 0.39
VPS4A-202ENST00000562754 STK32AQ8WU08 396 aa17.51■□□□□ 0.39
VPS4A-202ENST00000562754 EIF3CQ99613 913 aaKnown RBP17.51■□□□□ 0.39
VPS4A-202ENST00000562754 DESI2Q9BSY9 194 aa17.51■□□□□ 0.39
VPS4A-202ENST00000562754 NSUN3Q9H649 340 aaKnown RBP17.51■□□□□ 0.39
VPS4A-202ENST00000562754 TLE6Q9H808 572 aa17.51■□□□□ 0.39
VPS4A-202ENST00000562754 ZNF638Q14966 1978 aaKnown RBP17.5■□□□□ 0.39
VPS4A-202ENST00000562754 TNFRSF10BO14763 440 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 RTN2O75298 545 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 C1RP00736 705 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 ERBB2P04626 1255 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 MMP8P22894 467 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 ELF1P32519 619 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 NSFP46459 744 aaKnown RBP17.5■□□□□ 0.39
VPS4A-202ENST00000562754 TUFMP49411 452 aaKnown RBP17.5■□□□□ 0.39
VPS4A-202ENST00000562754 SLC8A3P57103 927 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 RBM10P98175 930 aaKnown RBP17.5■□□□□ 0.39
VPS4A-202ENST00000562754 C2CD6Q53TS8 623 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 TCEAL5Q5H9L2 206 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 MMS22LQ6ZRQ5 1243 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 SLC7A14Q8TBB6 771 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 GPR152Q8TDT2 470 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 KCTD13Q8WZ19 329 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 FAM161BQ96MY7 647 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 C11orf70Q9BRQ4 267 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 PACSIN1Q9BY11 444 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 UBXN6Q9BZV1 441 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 ISCUQ9H1K1 167 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 PNPLA8Q9NP80 782 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 MAN1C1Q9NR34 630 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 HCFC2Q9Y5Z7 792 aa17.5■□□□□ 0.39
VPS4A-202ENST00000562754 E5RJQ4 531 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 PIK3R2O00459 728 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 NRDCO43847 1150 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 FTLP02792 175 aaPredicted RBP17.49■□□□□ 0.39
VPS4A-202ENST00000562754 C8AP07357 584 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 RPL10AP62906 217 aaKnown RBP17.49■□□□□ 0.39
VPS4A-202ENST00000562754 ADIGQ0VDE8 80 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 HYAL1Q12794 435 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 KCNC3Q14003 757 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 RAB41Q5JT25 222 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 HABP4Q5JVS0 413 aaKnown RBP17.49■□□□□ 0.39
VPS4A-202ENST00000562754 LLGL2Q6P1M3 1020 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 ERICH1Q86X53 443 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 PPP1R13BQ96KQ4 1090 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 SPATA17Q96L03 361 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 HSFY1Q96LI6 401 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 NOX5Q96PH1 765 aa17.49■□□□□ 0.39
VPS4A-202ENST00000562754 CDCA3Q99618 268 aaPredicted RBP17.49■□□□□ 0.39
VPS4A-202ENST00000562754 CYLDQ9NQC7 956 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms