RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 PAFAH2Q99487 392 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 WDR83Q9BRX9 315 aaKnown RBP11.85□□□□□ -0.51
CUX1-218ENST00000560541 IMPG2Q9BZV3 1241 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 KIAA1217Q5T5P2 1943 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 KAT6AQ92794 2004 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 C2orf71A6NGG8 1288 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 CST8O60676 142 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 HIRAP54198 1017 aaPredicted RBP11.85□□□□□ -0.51
CUX1-218ENST00000560541 GEMIN4P57678 1058 aaKnown RBP11.85□□□□□ -0.51
CUX1-218ENST00000560541 KLC1Q07866 573 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 MAP7D1Q3KQU3 841 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 CCDC80Q76M96 950 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 FAM83AQ86UY5 434 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 TDRPQ86YL5 185 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 ARHGAP18Q8N392 663 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 EMC1Q8N766 993 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 TFAP2BQ92481 460 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 PTPRN2Q92932 1015 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 GPRASP2Q96D09 838 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 CGRRF1Q99675 332 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 FOXP3Q9BZS1 431 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 GINM1Q9NU53 330 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 PCSK1NQ9UHG2 260 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 RABGEF1Q9UJ41 708 aa11.85□□□□□ -0.51
CUX1-218ENST00000560541 CNTNAP2Q9UHC6 1331 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 TBXAS1P24557 533 aaPredicted RBP11.84□□□□□ -0.51
CUX1-218ENST00000560541 RFC1P35251 1148 aaPredicted RBP11.84□□□□□ -0.51
CUX1-218ENST00000560541 OLFML2BQ68BL8 750 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 RFWD3Q6PCD5 774 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 FBXO36Q8NEA4 188 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 CPT1BQ92523 772 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 KCNN1Q92952 543 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 RNPEPL1Q9HAU8 725 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 ZNF711Q9Y462 761 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 WDR81Q562E7 1941 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 ITGBL1O95965 494 aaPredicted RBP11.84□□□□□ -0.51
CUX1-218ENST00000560541 PSMA2P25787 234 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 IL1R2P27930 398 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 BASP1P80723 227 aaKnown RBP11.84□□□□□ -0.51
CUX1-218ENST00000560541 FSTL1Q12841 308 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 ABHD15Q6UXT9 468 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 LRRC6Q86X45 466 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 AGGF1Q8N302 714 aaeCLIP11.84□□□□□ -0.512e-7■■■■■ 57.8
CUX1-218ENST00000560541 WDTC1Q8N5D0 677 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 RDM1Q8NG50 284 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 JOSD2Q8TAC2 188 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 PRR11Q96HE9 360 aaPredicted RBP11.84□□□□□ -0.51
CUX1-218ENST00000560541 DENND2DQ9H6A0 471 aaPredicted RBP11.84□□□□□ -0.51
CUX1-218ENST00000560541 PCDH9Q9HC56 1237 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 CISHQ9NSE2 258 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 SHOC2Q9UQ13 582 aa11.84□□□□□ -0.51
CUX1-218ENST00000560541 CFAP69A5D8W1 941 aa11.83□□□□□ -0.51
CUX1-218ENST00000560541 PEX10O60683 326 aa11.83□□□□□ -0.51
CUX1-218ENST00000560541 TMEM63AO94886 807 aa11.83□□□□□ -0.51
CUX1-218ENST00000560541 OSTNP61366 133 aa11.83□□□□□ -0.51
CUX1-218ENST00000560541 PLOD1Q02809 727 aaPredicted RBP11.83□□□□□ -0.51
CUX1-218ENST00000560541 MCL1Q07820 350 aa11.83□□□□□ -0.51
CUX1-218ENST00000560541 BTG3Q14201 252 aaPredicted RBP11.83□□□□□ -0.51
CUX1-218ENST00000560541 TAF5Q15542 800 aa11.83□□□□□ -0.51
CUX1-218ENST00000560541 XKR3Q5GH77 459 aa11.83□□□□□ -0.51
CUX1-218ENST00000560541 FYB2Q5VWT5 728 aa11.83□□□□□ -0.51
CUX1-218ENST00000560541 FLAD1Q8NFF5 587 aa11.83□□□□□ -0.51
CUX1-218ENST00000560541 NSUN6Q8TEA1 469 aaKnown RBP11.83□□□□□ -0.51
CUX1-218ENST00000560541 CLIP3Q96DZ5 547 aa11.83□□□□□ -0.51
CUX1-218ENST00000560541 SENP1Q9P0U3 644 aa11.83□□□□□ -0.51
CUX1-218ENST00000560541 ZNRF3Q9ULT6 936 aa11.83□□□□□ -0.51
CUX1-218ENST00000560541 A0A0B4J269 797 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 CALB1P05937 261 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 ITGAVP06756 1048 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 CD19P15391 556 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 CALB2P22676 271 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 HOXD11P31277 338 aaPredicted RBP11.83□□□□□ -0.52
CUX1-218ENST00000560541 RTP1P59025 263 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 PARP6Q2NL67 630 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 EFHC2Q5JST6 749 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 PRAMEF18Q5VWM3 479 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 DRICH1Q6PGQ1 229 aaPredicted RBP11.83□□□□□ -0.52
CUX1-218ENST00000560541 CDR2LQ86X02 465 aaPredicted RBP11.83□□□□□ -0.52
CUX1-218ENST00000560541 UNC45BQ8IWX7 931 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 PALM2Q8IXS6 379 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 KIAA0319LQ8IZA0 1049 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 FAM71DQ8N9W8 422 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 ATP11CQ8NB49 1132 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 RSAD2Q8WXG1 361 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 GBP5Q96PP8 586 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 MIPEPQ99797 713 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 FBXO6Q9NRD1 293 aaPredicted RBP11.83□□□□□ -0.52
CUX1-218ENST00000560541 CYP39A1Q9NYL5 469 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 NXF1Q9UBU9 619 aaKnown RBP11.83□□□□□ -0.52
CUX1-218ENST00000560541 NFASCO94856 1347 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 BRWD3Q6RI45 1802 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 TMEM221A6NGB7 291 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 ATP5HO75947 161 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 TPBGLP0DKB5 382 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 HSPA1LP34931 641 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 RPL22P35268 128 aaKnown RBP11.83□□□□□ -0.52
CUX1-218ENST00000560541 RAP1GAPP47736 663 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 TFAMQ00059 246 aaKnown RBP11.83□□□□□ -0.52
CUX1-218ENST00000560541 RGS9BPQ6ZS82 235 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 CLNKQ7Z7G1 428 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms