RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 TRIM7Q9C029 511 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 CYLDQ9NQC7 956 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 SPG21Q9NZD8 308 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 INSL6Q9Y581 213 aa11.83□□□□□ -0.52
USP3-218ENST00000560202 TMEM191CA6NGB0 347 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 SIGLEC16A6NMB1 481 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 TMEM110-MUSTN1A8MSY1 372 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 MYO1FO00160 1098 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 NCK2O43639 380 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 OR4Q2P0C623 313 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 KRT3P12035 628 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 BDNFP23560 247 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 ACADSBP45954 432 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 RPL7AP62424 266 aaKnown RBP11.82□□□□□ -0.52
USP3-218ENST00000560202 USP41Q3LFD5 358 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 SLC39A12Q504Y0 691 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 OR6B2Q6IFH4 312 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 DCUN1D2Q6PH85 259 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 C4orf50Q6ZRC1 276 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 FAM183BPQ6ZVS7 135 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 ANKS3Q6ZW76 656 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 PEX26Q7Z412 305 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 SPATA2LQ8IUW3 424 aaPredicted RBP11.82□□□□□ -0.52
USP3-218ENST00000560202 FIBCD1Q8N539 461 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 KCTD13Q8WZ19 329 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 TMEM169Q96HH4 297 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 MCEEQ96PE7 176 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 SMOQ99835 787 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 VN1R3Q9BXE9 311 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 TLR10Q9BXR5 811 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 MTIF3Q9H2K0 278 aaKnown RBP11.82□□□□□ -0.52
USP3-218ENST00000560202 CSNK1G1Q9HCP0 422 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 AAASQ9NRG9 546 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 AMFRQ9UKV5 643 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 ALG6Q9Y672 507 aa11.82□□□□□ -0.52
USP3-218ENST00000560202 PAPSS1O43252 624 aaPredicted RBP11.81□□□□□ -0.52
USP3-218ENST00000560202 TBC1D4O60343 1298 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 LCP1P13796 627 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 ATP2A2P16615 1042 aaKnown RBP11.81□□□□□ -0.52
USP3-218ENST00000560202 CACNA2D1P54289 1103 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 AMPD2Q01433 879 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 NFE2Q16621 373 aaPredicted RBP11.81□□□□□ -0.52
USP3-218ENST00000560202 PTPROQ16827 1216 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 NT5DC3Q86UY8 548 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 ZDHHC17Q8IUH5 632 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 SCUBE3Q8IX30 993 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 ZMIZ2Q8NF64 920 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 KCNK16Q96T55 309 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 RAD9AQ99638 391 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 OXCT2Q9BYC2 517 aaPredicted RBP11.81□□□□□ -0.52
USP3-218ENST00000560202 RHOBTB2Q9BYZ6 727 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 UBXN6Q9BZV1 441 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 CHST7Q9NS84 486 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 TMEM30AQ9NV96 361 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 TMEM51Q9NW97 253 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 SNX12Q9UMY4 172 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 PACSIN2Q9UNF0 486 aaPredicted RBP11.81□□□□□ -0.52
USP3-218ENST00000560202 HYOU1Q9Y4L1 999 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 SAR1BQ9Y6B6 198 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 TLL1O43897 1013 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 PROSCO94903 275 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 SOD2P04179 222 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 PRLRP16471 622 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 COMTP21964 271 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 RFC1P35251 1148 aaPredicted RBP11.81□□□□□ -0.52
USP3-218ENST00000560202 PPM1AP35813 382 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 SLC6A3Q01959 620 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 RPS6KA1Q15418 735 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 CFAP221Q4G0U5 840 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 FAM102AQ5T9C2 384 aaPredicted RBP11.81□□□□□ -0.52
USP3-218ENST00000560202 RASIP1Q5U651 963 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 KIAA1841Q6NSI8 718 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 PRSS55Q6UWB4 352 aaPredicted RBP11.81□□□□□ -0.52
USP3-218ENST00000560202 OLFML1Q6UWY5 402 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 RSPO2Q6UXX9 243 aaPredicted RBP11.81□□□□□ -0.52
USP3-218ENST00000560202 JOSD2Q8TAC2 188 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 RIN2Q8WYP3 895 aaPredicted RBP11.81□□□□□ -0.52
USP3-218ENST00000560202 PIK3R5Q8WYR1 880 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 L2HGDHQ9H9P8 463 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 LRRC4Q9HBW1 653 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 METTL5Q9NRN9 209 aaKnown RBP11.81□□□□□ -0.52
USP3-218ENST00000560202 IP6K2Q9UHH9 426 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 LCMT1Q9UIC8 334 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 PCDHB12Q9Y5F1 795 aa11.81□□□□□ -0.52
USP3-218ENST00000560202 HHLA1C9JL84 531 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 LINC00271P0C7V0 271 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 CPB1P15086 417 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 SLC1A1P43005 524 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 DNA2P51530 1060 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 RABGGTBP53611 331 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 ARPP19P56211 112 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 OGDHQ02218 1023 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 ADIGQ0VDE8 80 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 GPR17Q13304 367 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 TUBB2AQ13885 445 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 TERF2Q15554 542 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 DDX53Q86TM3 631 aaKnown RBP11.8□□□□□ -0.52
USP3-218ENST00000560202 SP7Q8TDD2 431 aaPredicted RBP11.8□□□□□ -0.52
USP3-218ENST00000560202 CLP1Q92989 425 aaKnown RBP11.8□□□□□ -0.52
USP3-218ENST00000560202 HES6Q96HZ4 224 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms