RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 A0A1W2PQ64 194 aa18.9■□□□□ 0.62
HDDC3-205ENST00000559898 A0A1W2PQD8 194 aa18.9■□□□□ 0.62
HDDC3-205ENST00000559898 AKAP3O75969 853 aa18.9■□□□□ 0.62
HDDC3-205ENST00000559898 MLLT6P55198 1093 aaPredicted RBP18.9■□□□□ 0.62
HDDC3-205ENST00000559898 USP4Q13107 963 aa18.9■□□□□ 0.62
HDDC3-205ENST00000559898 CCINQ13939 588 aa18.9■□□□□ 0.62
HDDC3-205ENST00000559898 ZACNQ401N2 412 aa18.9■□□□□ 0.62
HDDC3-205ENST00000559898 DENND5BQ6ZUT9 1274 aa18.9■□□□□ 0.62
HDDC3-205ENST00000559898 RALGPS2Q86X27 583 aaPredicted RBP18.9■□□□□ 0.62
HDDC3-205ENST00000559898 KIAA2013Q8IYS2 634 aa18.9■□□□□ 0.62
HDDC3-205ENST00000559898 B3GALNT2Q8NCR0 500 aa18.9■□□□□ 0.62
HDDC3-205ENST00000559898 EZH1Q92800 747 aaPredicted RBP18.9■□□□□ 0.62
HDDC3-205ENST00000559898 APOBEC3GQ9HC16 384 aaKnown RBP18.9■□□□□ 0.62
HDDC3-205ENST00000559898 UXTQ9UBK9 157 aaPredicted RBP18.9■□□□□ 0.62
HDDC3-205ENST00000559898 K7ESF4 209 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 KINO60870 393 aaKnown RBP18.89■□□□□ 0.61
HDDC3-205ENST00000559898 ATICP31939 592 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 PGFP49763 221 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 PPP3CAQ08209 521 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 PNOCQ13519 176 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 MTF1Q14872 753 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 LPAL2Q16609 132 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 ZC3H14Q6PJT7 736 aaKnown RBP18.89■□□□□ 0.61
HDDC3-205ENST00000559898 VSTM1Q6UX27 236 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 SV2AQ7L0J3 742 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 ACOT1Q86TX2 421 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 GOLGA5Q8TBA6 731 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 SH3RF2Q8TEC5 729 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 TMEM174Q8WUU8 243 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 SYAP1Q96A49 352 aaPredicted RBP18.89■□□□□ 0.61
HDDC3-205ENST00000559898 TWNKQ96RR1 684 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 TTLL2Q9BWV7 592 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 VRTNQ9H8Y1 702 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 TRAF3IP3Q9Y228 551 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 MYH10P35580 1976 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 MYOFQ9NZM1 2061 aa18.89■□□□□ 0.61
HDDC3-205ENST00000559898 SPTBN4Q9H254 2564 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 EML5Q05BV3 1969 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 TRAV19A0A0A6YYK7 116 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 CHURC1-FNTBB4DL54 471 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 BEST1O76090 585 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 CLSTN1O94985 981 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 EGFP01133 1207 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 HLA-DRAP01903 254 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 CKMP06732 381 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 USP17L7P0C7H9 530 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 CCDC130P13994 396 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 FNTBP49356 437 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 PLCB2Q00722 1185 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 FAM160A1Q05DH4 1040 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 TAF10Q12962 218 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 ZNF268Q14587 947 aaPredicted RBP18.88■□□□□ 0.61
HDDC3-205ENST00000559898 ZNF667Q5HYK9 610 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 HEATR6Q6AI08 1181 aaKnown RBP18.88■□□□□ 0.61
HDDC3-205ENST00000559898 FAM35AQ86V20 835 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 ZMIZ2Q8NF64 920 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 SCAMP5Q8TAC9 235 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 ATRIPQ8WXE1 791 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 C8orf48Q96LL4 319 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 SCAND2PQ9GZW5 306 aaPredicted RBP18.88■□□□□ 0.61
HDDC3-205ENST00000559898 SEMA4AQ9H3S1 761 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 MMRN2Q9H8L6 949 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 THG1LQ9NWX6 298 aaKnown RBP18.88■□□□□ 0.61
HDDC3-205ENST00000559898 PCDHGA2Q9Y5H1 932 aa18.88■□□□□ 0.61
HDDC3-205ENST00000559898 ZNF840PA6NDX5 716 aa18.87■□□□□ 0.61
HDDC3-205ENST00000559898 HDCP19113 662 aa18.87■□□□□ 0.61
HDDC3-205ENST00000559898 NR2F2P24468 414 aa18.87■□□□□ 0.61
HDDC3-205ENST00000559898 GJA4P35212 333 aa18.87■□□□□ 0.61
HDDC3-205ENST00000559898 ASPAP45381 313 aa18.87■□□□□ 0.61
HDDC3-205ENST00000559898 CXCL12P48061 93 aa18.87■□□□□ 0.61
HDDC3-205ENST00000559898 GCLMP48507 274 aa18.87■□□□□ 0.61
HDDC3-205ENST00000559898 GALK1P51570 392 aa18.87■□□□□ 0.61
HDDC3-205ENST00000559898 MAPRE1Q15691 268 aaKnown RBP18.87■□□□□ 0.61
HDDC3-205ENST00000559898 EML3Q32P44 896 aa18.87■□□□□ 0.61
HDDC3-205ENST00000559898 ZCWPW2Q504Y3 356 aa18.87■□□□□ 0.61
HDDC3-205ENST00000559898 TMEM196Q5HYL7 178 aa18.87■□□□□ 0.61
HDDC3-205ENST00000559898 SPEM1Q8N4L4 309 aa18.87■□□□□ 0.61
HDDC3-205ENST00000559898 TMC2Q8TDI7 906 aa18.87■□□□□ 0.61
HDDC3-205ENST00000559898 TAS1R2Q8TE23 839 aa18.87■□□□□ 0.61
HDDC3-205ENST00000559898 KIF9Q9HAQ2 790 aa18.87■□□□□ 0.61
HDDC3-205ENST00000559898 DUS2Q9NX74 493 aaKnown RBP18.87■□□□□ 0.61
HDDC3-205ENST00000559898 TNFRSF10BO14763 440 aa18.86■□□□□ 0.61
HDDC3-205ENST00000559898 TRIM66O15016 1216 aa18.86■□□□□ 0.61
HDDC3-205ENST00000559898 CALUO43852 315 aaPredicted RBP18.86■□□□□ 0.61
HDDC3-205ENST00000559898 ABL1P00519 1130 aa18.86■□□□□ 0.61
HDDC3-205ENST00000559898 MYL1P05976 194 aa18.86■□□□□ 0.61
HDDC3-205ENST00000559898 FAM163BP0C2L3 166 aa18.86■□□□□ 0.61
HDDC3-205ENST00000559898 ANXA13P27216 316 aa18.86■□□□□ 0.61
HDDC3-205ENST00000559898 PXNP49023 591 aaPredicted RBP18.86■□□□□ 0.61
HDDC3-205ENST00000559898 CCR3P51677 355 aa18.86■□□□□ 0.61
HDDC3-205ENST00000559898 VAMP7P51809 220 aa18.86■□□□□ 0.61
HDDC3-205ENST00000559898 NDST1P52848 882 aa18.86■□□□□ 0.61
HDDC3-205ENST00000559898 NOP14P78316 857 aaKnown RBP18.86■□□□□ 0.61
HDDC3-205ENST00000559898 LRRC32Q14392 662 aa18.86■□□□□ 0.61
HDDC3-205ENST00000559898 GAB4Q2WGN9 574 aa18.86■□□□□ 0.61
HDDC3-205ENST00000559898 MAMSTRQ6ZN01 415 aa18.86■□□□□ 0.61
HDDC3-205ENST00000559898 FUKQ8N0W3 1084 aa18.86■□□□□ 0.61
HDDC3-205ENST00000559898 FMR1NBQ8N0W7 255 aaPredicted RBP18.86■□□□□ 0.61
HDDC3-205ENST00000559898 C12orf29Q8N999 325 aa18.86■□□□□ 0.61
HDDC3-205ENST00000559898 OSCP1Q8WVF1 389 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms