RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 SCAMP5Q8TAC9 235 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 SEMA4DQ92854 862 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 NKD2Q969F2 451 aaPredicted RBP13.32□□□□□ -0.28
SMAD3-208ENST00000558827 CLDN23Q96B33 292 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 CCDC34Q96HJ3 373 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 TWNKQ96RR1 684 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 NELL2Q99435 816 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 HPS4Q9NQG7 708 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 THG1LQ9NWX6 298 aaKnown RBP13.32□□□□□ -0.28
SMAD3-208ENST00000558827 SMPD4Q9NXE4 827 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 TRPM5Q9NZQ8 1165 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 UXTQ9UBK9 157 aaPredicted RBP13.32□□□□□ -0.28
SMAD3-208ENST00000558827 CHORDC1Q9UHD1 332 aaPredicted RBP13.32□□□□□ -0.28
SMAD3-208ENST00000558827 WNT6Q9Y6F9 365 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 PTPRDP23468 1912 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 VPS13AQ96RL7 3174 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 COL4A2P08572 1712 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 PRR23AA6NEV1 266 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 BIN1O00499 593 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 TRIM66O15016 1216 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 AP1G2O75843 785 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 SMC2O95347 1197 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 ASS1P00966 412 aaKnown RBP13.31□□□□□ -0.28
SMAD3-208ENST00000558827 CTHP32929 405 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 ZNF658Q5TYW1 1059 aaPredicted RBP13.31□□□□□ -0.28
SMAD3-208ENST00000558827 TCERG1LQ5VWI1 586 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 KLHL10Q6JEL2 608 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 CC2D1AQ6P1N0 951 aaPredicted RBP13.31□□□□□ -0.28
SMAD3-208ENST00000558827 Q6ZS52 159 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 INTS8Q75QN2 995 aaKnown RBP13.31□□□□□ -0.28
SMAD3-208ENST00000558827 FAM35AQ86V20 835 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 ZNF687Q8N1G0 1237 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 SLC2A14Q8TDB8 520 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 SH3RF2Q8TEC5 729 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 TRMT2BQ96GJ1 504 aaKnown RBP13.31□□□□□ -0.28
SMAD3-208ENST00000558827 SPATA17Q96L03 361 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 MYRFLQ96LU7 910 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 OSBPL6Q9BZF3 934 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 RNF38Q9H0F5 515 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 LINC00597Q9H2U6 94 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 VRTNQ9H8Y1 702 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 TRPV5Q9NQA5 729 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 C2orf42Q9NWW7 574 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 OBP2AQ9NY56 170 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 GCNT4Q9P109 453 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 MAN1B1Q9UKM7 699 aa13.31□□□□□ -0.28
SMAD3-208ENST00000558827 GPR179Q6PRD1 2367 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 IKBKBO14920 756 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 CETN3O15182 167 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 BEST1O76090 585 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 FAM163BP0C2L3 166 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 USP17L7P0C7H9 530 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 CHRNB1P11230 501 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 P4HA1P13674 534 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 CD44P16070 742 aaKnown RBP13.3□□□□□ -0.28
SMAD3-208ENST00000558827 DDX6P26196 483 aaKnown RBP eCLIP13.3□□□□□ -0.281e-5■■■□□ 17.8
SMAD3-208ENST00000558827 ASPAP45381 313 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 NOP14P78316 857 aaKnown RBP13.3□□□□□ -0.28
SMAD3-208ENST00000558827 RUNX3Q13761 415 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 GAS6Q14393 721 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 MTF1Q14872 753 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 NFIL3Q16649 462 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 ITPRIPL2Q3MIP1 535 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 ZNF394Q53GI3 561 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 DCAF17Q5H9S7 520 aaPredicted RBP13.3□□□□□ -0.28
SMAD3-208ENST00000558827 FUKQ8N0W3 1084 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 TATDN2Q93075 761 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 C8orf48Q96LL4 319 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 FAM83CQ9BQN1 747 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 ELOVL4Q9GZR5 314 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 C8orf33Q9H7E9 229 aaPredicted RBP13.3□□□□□ -0.28
SMAD3-208ENST00000558827 KRT82Q9NSB4 513 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 POLR3BQ9NW08 1133 aaPredicted RBP13.3□□□□□ -0.28
SMAD3-208ENST00000558827 RMND1Q9NWS8 449 aa13.3□□□□□ -0.28
SMAD3-208ENST00000558827 DUS2Q9NX74 493 aaKnown RBP13.3□□□□□ -0.28
SMAD3-208ENST00000558827 DMDP11532 3685 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 ZNF840PA6NDX5 716 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 PROB1E7EW31 1015 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 KINO60870 393 aaKnown RBP13.29□□□□□ -0.28
SMAD3-208ENST00000558827 EPB41P11171 864 aaKnown RBP13.29□□□□□ -0.28
SMAD3-208ENST00000558827 YWHAQP27348 245 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 WEE1P30291 646 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 IFNAR2P48551 515 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 STX17P56962 302 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 MAP3K7CLP57077 242 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 ZXDBP98169 803 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 PLCB2Q00722 1185 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 SATB1Q01826 763 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 LRMPQ12912 555 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 ADSSL1Q8N142 457 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 NUP93Q8N1F7 819 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 ZMIZ2Q8NF64 920 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 TMEM174Q8WUU8 243 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 FBXO32Q969P5 355 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 CHFRQ96EP1 664 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 TNIP3Q96KP6 325 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 GSDMAQ96QA5 445 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 TSG101Q99816 390 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 SMOQ99835 787 aa13.29□□□□□ -0.28
SMAD3-208ENST00000558827 CHRDQ9H2X0 955 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms