RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 TACC1O75410 805 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 HSP90AA1P07900 732 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 CCDC192P0DO97 292 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 ZSCAN22P10073 491 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 PDIA4P13667 645 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 CASP1P29466 404 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 PXNP49023 591 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 CYP24A1Q07973 514 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 EHHADHQ08426 723 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 NR1H3Q13133 447 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 TRPC3Q13507 836 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 EML3Q32P44 896 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 WDR72Q3MJ13 1102 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 MDH1BQ5I0G3 518 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 PRR23CQ6ZRP0 262 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 CAMKK1Q8N5S9 505 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 OR6B3Q8NGW1 331 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 NETO1Q8TDF5 533 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 SH3RF2Q8TEC5 729 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 SCFD1Q8WVM8 642 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 GAB3Q8WWW8 586 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 CD101Q93033 1021 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 SNX21Q969T3 373 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 MRPL45Q9BRJ2 306 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 CGNQ9P2M7 1197 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 ARHGAP26Q9UNA1 814 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 SDK1Q7Z5N4 2213 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 PVALEFA0A1B0GWK0 134 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 A8MXQ7 604 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 AXIN1O15169 862 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 FOXD2O60548 495 aaPredicted RBP11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 RPP40O75818 363 aaKnown RBP11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 FAM163BP0C2L3 166 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 TCF3P15923 654 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 PFKLP17858 780 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 AFMP43652 599 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 ME1P48163 572 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 PPP3CCP48454 512 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 USP46P62068 366 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 PSMD2Q13200 908 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 NAIF1Q69YI7 327 aaPredicted RBP11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 CACNA2D4Q7Z3S7 1137 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 RPLP0P6Q8NHW5 317 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 C8orf48Q96LL4 319 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 TTLL2Q9BWV7 592 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 SLC39A2Q9NP94 309 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 PCDHA7Q9UN72 937 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 NME7Q9Y5B8 376 aa11.81□□□□□ -0.52
CCDC88C-213ENST00000557455 F8VP50 259 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 LEFTY2O00292 366 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 SLC30A4O14863 429 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 EXOC3O60645 756 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 PHACTR2O75167 634 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 CLSTN1O94985 981 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 NFATC1O95644 943 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 STAU1O95793 577 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 F13A1P00488 732 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 ABL1P00519 1130 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 PTPN1P18031 435 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 ATICP31939 592 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 MYL6P60660 151 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 NOP14P78316 857 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 CUL4BQ13620 913 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 KNOP1Q1ED39 458 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 BMT2Q1RMZ1 405 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 TDRD10Q5VZ19 366 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 RESP18Q5W5W9 173 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 ATL3Q6DD88 541 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 SYT13Q7L8C5 426 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 HSCBQ8IWL3 235 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 C12orf56Q8IXR9 622 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 CEP57L1Q8IYX8 460 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 B3GALNT2Q8NCR0 500 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 ZNF516Q92618 1163 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 SYAP1Q96A49 352 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 ACDQ96AP0 544 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 LOXL4Q96JB6 756 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 HHIPQ96QV1 700 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 ELOVL4Q9GZR5 314 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 ARRDC1-AS1Q9H2J1 176 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 LINC00597Q9H2U6 94 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 DPEP3Q9H4B8 488 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 POLR3BQ9NW08 1133 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 NXF1Q9UBU9 619 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 CFAP45Q9UL16 551 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 MYOFQ9NZM1 2061 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 NCOR2Q9Y618 2525 aa11.8□□□□□ -0.52
CCDC88C-213ENST00000557455 ZNF840PA6NDX5 716 aa11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 GDF9O60383 454 aa11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 AKAP3O75969 853 aa11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 ZXDBP98169 803 aa11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 IFRD2Q12894 506 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 TAF10Q12962 218 aa11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 BIRC3Q13489 604 aa11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 AASDHQ4L235 1098 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 KBTBD6Q86V97 674 aa11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 C12orf50Q8NA57 414 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 CCDC26Q8TAB7 109 aa11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 GOLGA5Q8TBA6 731 aa11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 EZH1Q92800 747 aaPredicted RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms