RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 KDELR1P24390 212 aa17.02■□□□□ 0.31
SHMT2-231ENST00000557433 PAPOLAP51003 745 aaKnown RBP17.02■□□□□ 0.31
SHMT2-231ENST00000557433 ROR2Q01974 943 aaKnown RBP17.02■□□□□ 0.31
SHMT2-231ENST00000557433 ATG16L1Q676U5 607 aa17.02■□□□□ 0.31
SHMT2-231ENST00000557433 TXNRD3NBQ6F5E7 133 aa17.02■□□□□ 0.31
SHMT2-231ENST00000557433 ABHD15Q6UXT9 468 aa17.02■□□□□ 0.31
SHMT2-231ENST00000557433 LRRC6Q86X45 466 aa17.02■□□□□ 0.31
SHMT2-231ENST00000557433 BRSK2Q8IWQ3 736 aa17.02■□□□□ 0.31
SHMT2-231ENST00000557433 TEKT4Q8WW24 435 aa17.02■□□□□ 0.31
SHMT2-231ENST00000557433 PTPRN2Q92932 1015 aa17.02■□□□□ 0.31
SHMT2-231ENST00000557433 NR1H4Q96RI1 486 aaPredicted RBP17.02■□□□□ 0.31
SHMT2-231ENST00000557433 SYT15Q9BQS2 421 aa17.02■□□□□ 0.31
SHMT2-231ENST00000557433 WDR83Q9BRX9 315 aaKnown RBP17.02■□□□□ 0.31
SHMT2-231ENST00000557433 FAM192AQ9GZU8 254 aa17.02■□□□□ 0.31
SHMT2-231ENST00000557433 PDP2Q9P2J9 529 aa17.02■□□□□ 0.31
SHMT2-231ENST00000557433 SERPINB4P48594 390 aa17.01■□□□□ 0.31
SHMT2-231ENST00000557433 TRMT5Q32P41 509 aaKnown RBP17.01■□□□□ 0.31
SHMT2-231ENST00000557433 DNAL1Q4LDG9 190 aa17.01■□□□□ 0.31
SHMT2-231ENST00000557433 TTC39BQ5VTQ0 682 aaPredicted RBP17.01■□□□□ 0.31
SHMT2-231ENST00000557433 AP1ARQ63HQ0 302 aa17.01■□□□□ 0.31
SHMT2-231ENST00000557433 GPAT2Q6NUI2 795 aa17.01■□□□□ 0.31
SHMT2-231ENST00000557433 ZPBP2Q6X784 338 aa17.01■□□□□ 0.31
SHMT2-231ENST00000557433 NET1Q7Z628 596 aaPredicted RBP17.01■□□□□ 0.31
SHMT2-231ENST00000557433 SCYL3Q8IZE3 742 aa17.01■□□□□ 0.31
SHMT2-231ENST00000557433 SMC1BQ8NDV3 1235 aa17.01■□□□□ 0.31
SHMT2-231ENST00000557433 SPDYE1Q8NFV5 336 aaPredicted RBP17.01■□□□□ 0.31
SHMT2-231ENST00000557433 NSUN6Q8TEA1 469 aaKnown RBP17.01■□□□□ 0.31
SHMT2-231ENST00000557433 FAM84AQ96KN4 292 aa17.01■□□□□ 0.31
SHMT2-231ENST00000557433 IQCGQ9H095 443 aaKnown RBP17.01■□□□□ 0.31
SHMT2-231ENST00000557433 NUMBLQ9Y6R0 609 aa17.01■□□□□ 0.31
SHMT2-231ENST00000557433 WDR81Q562E7 1941 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 FCHO1O14526 889 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 CHADO15335 359 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 MED7O43513 233 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 BANF1O75531 89 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 TMEM63AO94886 807 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 ARL2P36404 184 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 PGM1P36871 562 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 ACTR2P61160 394 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 TGFB2P61812 414 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 DBN1Q16643 649 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 RINLQ6ZS11 566 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 SESTD1Q86VW0 696 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 SLC26A11Q86WA9 606 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 GALNT15Q8N3T1 639 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 PDCD7Q8N8D1 485 aaKnown RBP17■□□□□ 0.31
SHMT2-231ENST00000557433 OR5B17Q8NGF7 314 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 AKT1S1Q96B36 256 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 SIKE1Q9BRV8 207 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 HAPLN2Q9GZV7 340 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 WWP1Q9H0M0 922 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 DHX33Q9H6R0 707 aaKnown RBP17■□□□□ 0.31
SHMT2-231ENST00000557433 RSAD1Q9HA92 442 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 PAPOLBQ9NRJ5 636 aaKnown RBP17■□□□□ 0.31
SHMT2-231ENST00000557433 DDX43Q9NXZ2 648 aaKnown RBP17■□□□□ 0.31
SHMT2-231ENST00000557433 PGAP2Q9UHJ9 254 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 TRPC5Q9UL62 973 aaPredicted RBP17■□□□□ 0.31
SHMT2-231ENST00000557433 SORCS3Q9UPU3 1222 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 PPME1Q9Y570 386 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 ENO4A6NNW6 628 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 COPEO14579 308 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 TRDMT1O14717 391 aaKnown RBP17■□□□□ 0.31
SHMT2-231ENST00000557433 LRCH4O75427 683 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 KRT36O76013 467 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 KRT37O76014 449 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 SUPT20HL2P0C7V6 817 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 MYL2P10916 166 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 KRT3P12035 628 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 SSTR3P32745 418 aaPredicted RBP17■□□□□ 0.31
SHMT2-231ENST00000557433 GDF10P55107 478 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 EIF3EP60228 445 aaKnown RBP17■□□□□ 0.31
SHMT2-231ENST00000557433 DPYSL3Q14195 570 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 RCN2Q14257 317 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 GNPTABQ3T906 1256 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 SUPT20HL1Q3ZLR7 823 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 OR52E8Q6IFG1 317 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 CCDC60Q8IWA6 550 aaPredicted RBP17■□□□□ 0.31
SHMT2-231ENST00000557433 CMASQ8NFW8 434 aaPredicted RBP17■□□□□ 0.31
SHMT2-231ENST00000557433 FAM111AQ96PZ2 611 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 ZNF184Q99676 751 aaPredicted RBP17■□□□□ 0.31
SHMT2-231ENST00000557433 TMEM39BQ9GZU3 492 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 CISHQ9NSE2 258 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 DLGAP2Q9P1A6 1054 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 TEX264Q9Y6I9 313 aa17■□□□□ 0.31
SHMT2-231ENST00000557433 TCRBV9S1A1TA0A576 114 aa16.99■□□□□ 0.31
SHMT2-231ENST00000557433 GOLGA8RI6L899 631 aa16.99■□□□□ 0.31
SHMT2-231ENST00000557433 TBX10O75333 385 aa16.99■□□□□ 0.31
SHMT2-231ENST00000557433 CIB2O75838 187 aa16.99■□□□□ 0.31
SHMT2-231ENST00000557433 BRD2P25440 801 aaKnown RBP16.99■□□□□ 0.31
SHMT2-231ENST00000557433 RFC5P40937 340 aa16.99■□□□□ 0.31
SHMT2-231ENST00000557433 GCLCP48506 637 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-231ENST00000557433 OAZ1P54368 228 aa16.99■□□□□ 0.31
SHMT2-231ENST00000557433 MTERF2Q49AM1 385 aa16.99■□□□□ 0.31
SHMT2-231ENST00000557433 CWF19L1Q69YN2 538 aaKnown RBP16.99■□□□□ 0.31
SHMT2-231ENST00000557433 WDTC1Q8N5D0 677 aa16.99■□□□□ 0.31
SHMT2-231ENST00000557433 TTC17Q96AE7 1141 aa16.99■□□□□ 0.31
SHMT2-231ENST00000557433 MTBPQ96DY7 904 aa16.99■□□□□ 0.31
SHMT2-231ENST00000557433 IFT43Q96FT9 208 aa16.99■□□□□ 0.31
SHMT2-231ENST00000557433 GPAMQ9HCL2 828 aa16.99■□□□□ 0.31
SHMT2-231ENST00000557433 LRRIQ4A6NIV6 560 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms