RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 HMGB4Q8WW32 186 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 FOXD4L4Q8WXT5 416 aaPredicted RBP10.03□□□□□ -0.8
SYNE2-224ENST00000557024 CYP2S1Q96SQ9 504 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 LINC00597Q9H2U6 94 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.03□□□□□ -0.8
SYNE2-224ENST00000557024 ABCA7Q8IZY2 2146 aa10.03□□□□□ -0.8
SYNE2-224ENST00000557024 ASCC3Q8N3C0 2202 aaKnown RBP10.02□□□□□ -0.81
SYNE2-224ENST00000557024 TRAV19A0A0A6YYK7 116 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 E9PMD0 336 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 SH3BP5O60239 455 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 KLF8O95600 359 aaPredicted RBP10.02□□□□□ -0.81
SYNE2-224ENST00000557024 SERPINF2P08697 491 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 USP17L7P0C7H9 530 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 FTH1P19P0C7X4 201 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 MAPTP10636 758 aaKnown RBP10.02□□□□□ -0.81
SYNE2-224ENST00000557024 DPP6P42658 865 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 RAD51AP2Q09MP3 1159 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 MAP7D1Q3KQU3 841 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 ZC2HC1CQ53FD0 456 aaPredicted RBP10.02□□□□□ -0.81
SYNE2-224ENST00000557024 SPATA1Q5VX52 437 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 PEAR1Q5VY43 1037 aaPredicted RBP10.02□□□□□ -0.81
SYNE2-224ENST00000557024 C9orf57Q5W0N0 161 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 JADE1Q6IE81 842 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 ZPBP2Q6X784 338 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 METTL23Q86XA0 190 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 THEM5Q8N1Q8 247 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 TMEM161BQ8NDZ6 487 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 GLIS3Q8NEA6 775 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 CEP76Q8TAP6 659 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 SH3RF2Q8TEC5 729 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 C2orf15Q8WU43 125 aaKnown RBP10.02□□□□□ -0.81
SYNE2-224ENST00000557024 ADAMTS14Q8WXS8 1223 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 BICD1Q96G01 975 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 ARID3AQ99856 593 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 PI4K2AQ9BTU6 479 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 TMEM206Q9H813 350 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 CAPN10Q9HC96 672 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 ZDHHC4Q9NPG8 344 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 TMLHEQ9NVH6 421 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 DSEQ9UL01 958 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 CELSR3Q9NYQ7 3312 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 TRIP11Q15643 1979 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 ATG2BQ96BY7 2078 aa10.02□□□□□ -0.81
SYNE2-224ENST00000557024 TCRBV21S2A2A0A5A6 115 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 SGK1O00141 431 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 CYB561D2O14569 222 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 PRPF40AO75400 957 aaKnown RBP10.01□□□□□ -0.81
SYNE2-224ENST00000557024 NFATC1O95644 943 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 PRB1P04280 392 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 NFICP08651 508 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 CSH1P0DML2 217 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 CSH2P0DML3 217 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 ZSCAN22P10073 491 aaPredicted RBP10.01□□□□□ -0.81
SYNE2-224ENST00000557024 HOXD12P35452 270 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 MRPS21P82921 87 aaKnown RBP10.01□□□□□ -0.81
SYNE2-224ENST00000557024 RPL6Q02878 288 aaKnown RBP10.01□□□□□ -0.81
SYNE2-224ENST00000557024 MESP2Q0VG99 397 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 SMARCB1Q12824 385 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 HNRNPDQ14103 355 aaKnown RBP10.01□□□□□ -0.81
SYNE2-224ENST00000557024 DDR2Q16832 855 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 GAB4Q2WGN9 574 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 SPDYCQ5MJ68 293 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 EMC10Q5UCC4 262 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 WSCD1Q658N2 575 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 RINT1Q6NUQ1 792 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 PGBD3Q8N328 593 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 ARL14EPQ8N8R7 260 aaPredicted RBP10.01□□□□□ -0.81
SYNE2-224ENST00000557024 IL17RCQ8NAC3 791 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 SNX29Q8TEQ0 813 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 CRELD1Q96HD1 420 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 PYM1Q9BRP8 204 aaKnown RBP10.01□□□□□ -0.81
SYNE2-224ENST00000557024 ZSCAN16Q9H4T2 348 aaPredicted RBP10.01□□□□□ -0.81
SYNE2-224ENST00000557024 RPF1Q9H9Y2 349 aaKnown RBP10.01□□□□□ -0.81
SYNE2-224ENST00000557024 C17orf75Q9HAS0 396 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 POLMQ9NP87 494 aaPredicted RBP10.01□□□□□ -0.81
SYNE2-224ENST00000557024 DNAAF2Q9NVR5 837 aaKnown RBP10.01□□□□□ -0.81
SYNE2-224ENST00000557024 CACNA2D2Q9NY47 1150 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 LRWD1Q9UFC0 647 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 DNM3Q9UQ16 869 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 PCDHB9Q9Y5E1 797 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 PCDHB5Q9Y5E4 795 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 ATP6V1DQ9Y5K8 247 aa10.01□□□□□ -0.81
SYNE2-224ENST00000557024 KALRNO60229 2985 aa10□□□□□ -0.81
SYNE2-224ENST00000557024 ANO9A1A5B4 782 aa10□□□□□ -0.81
SYNE2-224ENST00000557024 C2orf78A6NCI8 922 aa10□□□□□ -0.81
SYNE2-224ENST00000557024 PIRO00625 290 aa10□□□□□ -0.81
SYNE2-224ENST00000557024 AP5Z1O43299 807 aa10□□□□□ -0.81
SYNE2-224ENST00000557024 FAM189A1O60320 539 aa10□□□□□ -0.81
SYNE2-224ENST00000557024 F13A1P00488 732 aa10□□□□□ -0.81
SYNE2-224ENST00000557024 PLS3P13797 630 aa10□□□□□ -0.81
SYNE2-224ENST00000557024 PAX3P23760 479 aa10□□□□□ -0.81
SYNE2-224ENST00000557024 SMTNP53814 917 aa10□□□□□ -0.81
SYNE2-224ENST00000557024 BYSLQ13895 437 aaKnown RBP10□□□□□ -0.81
SYNE2-224ENST00000557024 KCNB1Q14721 858 aa10□□□□□ -0.81
SYNE2-224ENST00000557024 TMEM132DQ14C87 1099 aa10□□□□□ -0.81
SYNE2-224ENST00000557024 C1orf186Q6ZWK4 172 aa10□□□□□ -0.81
SYNE2-224ENST00000557024 KCNK18Q7Z418 384 aa10□□□□□ -0.81
SYNE2-224ENST00000557024 NAXDQ8IW45 347 aa10□□□□□ -0.81
SYNE2-224ENST00000557024 DCP1BQ8IZD4 617 aaKnown RBP10□□□□□ -0.81
SYNE2-224ENST00000557024 LRRC15Q8TF66 581 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms