RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, human

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLIRP-208	ENST00000556956	CCDC26	Q8TAB7	109 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	HDAC7	Q8WUI4	952 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	LMBR1	Q8WVP7	490 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	CASKIN2	Q8WXE0	1202 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	RAPGEF5	Q92565	580 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	ESR2	Q92731	530 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	SYN2	Q92777	582 aa	Predicted RBP	3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	P2RX5	Q93086	422 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	SAAL1	Q96ER3	474 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	CHMP6	Q96FZ7	201 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	ZNF496	Q96IT1	587 aa	Predicted RBP	3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	FAXDC2	Q96IV6	333 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	IFT74	Q96LB3	600 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	ZSWIM3	Q96MP5	696 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	DEPDC7	Q96QD5	511 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	SPAG5	Q96R06	1193 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	SRPK1	Q96SB4	655 aa	Known RBP	3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	KRT12	Q99456	494 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	TSG101	Q99816	390 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	SYT3	Q9BQG1	590 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	MYL10	Q9BUA6	226 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	PLA2G12B	Q9BX93	195 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	PUS3	Q9BZE2	481 aa	Known RBP	3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	TTYH3	Q9C0H2	523 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	LRRC27	Q9C0I9	530 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	STMN4	Q9H169	189 aa	Predicted RBP	3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	TAF1D	Q9H5J8	278 aa	Predicted RBP	3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	SEC61A2	Q9H9S3	476 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	EBF2	Q9HAK2	575 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	MLXIP	Q9HAP2	919 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	NOD2	Q9HC29	1040 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	FAM114A2	Q9NRY5	505 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	RBM12	Q9NTZ6	932 aa	Known RBP	3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	AGPAT5	Q9NUQ2	364 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	RIC8B	Q9NVN3	520 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	HAUS2	Q9NVX0	235 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	BAIAP2L1	Q9UHR4	511 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	FBXO10	Q9UK96	956 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	NFU1	Q9UMS0	254 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	PCDHA8	Q9Y5H6	950 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	ATP23	Q9Y6H3	246 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	XIRP1	Q702N8	1843 aa	Known RBP	3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	ABCB11	O95342	1321 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	XDH	P47989	1333 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	ZNF532	Q9HCE3	1301 aa		3.11	□□□□□ -1.91
SLIRP-208	ENST00000556956	LTN1	O94822	1766 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	SLIT3	O75094	1523 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	TCRBV5S4A2T	A0A5A2	114 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	BLACE	A4D250	179 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	KLHL33	A6NCF5	533 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	RASSF10	A6NK89	507 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	ZNF839	A8K0R7	811 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	BTNL10	A8MVZ5	291 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	CCDC188	H7C350	402 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	DNM1L	O00429	736 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	LAD1	O00515	517 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	ADCY3	O60266	1144 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	IDH1	O75874	414 aa	Known RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	FLOT1	O75955	427 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	SNUPN	O95149	360 aa	Known RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	ANP32D	O95626	131 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	GC	P02774	474 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	SERPING1	P05155	500 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	PCCA	P05165	728 aa	Predicted RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	CSF1R	P07333	972 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	RPSA	P08865	295 aa	Known RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	FAM153B	P0C7A2	387 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	MYB	P10242	640 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	PDE6A	P16499	860 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	PTPN1	P18031	435 aa	Known RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	DRD4	P21917	467 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	HPD	P32754	393 aa	Predicted RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	KIF5B	P33176	963 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	CTNNA1	P35221	906 aa	Known RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	GCK	P35557	465 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	HSD17B3	P37058	310 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	PRPH	P41219	470 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	UBA7	P41226	1012 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	RWDD2B	P57060	319 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	MAP2K1	Q02750	393 aa	Predicted RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	PPARA	Q07869	468 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	ADCY2	Q08462	1091 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	DBP	Q10586	325 aa	Predicted RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	TRAF1	Q13077	416 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	TCIRG1	Q13488	830 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	BIRC2	Q13490	618 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	BYSL	Q13895	437 aa	Known RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	HLTF	Q14527	1009 aa	Known RBP eCLIP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	SEPT2	Q15019	361 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	RPS6KA1	Q15418	735 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	NAB2	Q15742	525 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	CLUL1	Q15846	466 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	MAN2A1	Q16706	1144 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	FAM153C	Q494X1	144 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	SLC9C1	Q4G0N8	1177 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	IFIT1B	Q5T764	474 aa	Known RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	SFMBT2	Q5VUG0	894 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	CD276	Q5ZPR3	534 aa		3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	NAIF1	Q69YI7	327 aa	Predicted RBP	3.1	□□□□□ -1.91
SLIRP-208	ENST00000556956	CAPRIN2	Q6IMN6	1127 aa	Known RBP	3.1	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms