RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	C1orf131	Q8NDD1	294 aa	Known RBP	13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	SLC22A17	Q8WUG5	538 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	PDLIM2	Q96JY6	352 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	KCNK16	Q96T55	309 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	MIS12	Q9H081	205 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	SFXN1	Q9H9B4	322 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	LRRC4	Q9HBW1	653 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	CSNK1G1	Q9HCP0	422 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	ARHGAP20	Q9P2F6	1191 aa		13.22	□□□□□ -0.29
ABCD4-223	ENST00000555904	XYLB	O75191	536 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	SOAT2	O75908	522 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	VNN2	O95498	520 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	PLEK	P08567	350 aa	Predicted RBP	13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	HNRNPA1	P09651	372 aa	Known RBP eCLIP	13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	HOXA9	P31269	272 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	CYLC1	P35663	651 aa	Predicted RBP	13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	ACADSB	P45954	432 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	PLA2G4A	P47712	749 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	HYAL1	Q12794	435 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	PDCL	Q13371	301 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	ADGRE1	Q14246	886 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	DDR2	Q16832	855 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	CLEC16A	Q2KHT3	1053 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	NAA35	Q5VZE5	725 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	EP400NL	Q6ZTU2	488 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	PIGZ	Q86VD9	579 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	CCDC170	Q8IYT3	715 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	STK32A	Q8WU08	396 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	MYLIP	Q8WY64	445 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	SPATA17	Q96L03	361 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	CDX2	Q99626	313 aa	Predicted RBP	13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	SMO	Q99835	787 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	UBXN6	Q9BZV1	441 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	CRISPLD1	Q9H336	500 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	LUC7L	Q9NQ29	371 aa	Known RBP	13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	ZDHHC7	Q9NXF8	308 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	ADAMTS1	Q9UHI8	967 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	ASB3	Q9Y575	518 aa		13.21	□□□□□ -0.29
ABCD4-223	ENST00000555904	TRIOBP	Q9H2D6	2365 aa		13.21	□□□□□ -0.3
ABCD4-223	ENST00000555904	ZMYND10	O75800	440 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	RTN3	O95197	1032 aa	Predicted RBP	13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	CFH	P08603	1231 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	CSH1	P0DML2	217 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	CSH2	P0DML3	217 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	CHRNB2	P17787	502 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	ATF6	P18850	670 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	CDH5	P33151	784 aa	Predicted RBP	13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	GPD2	P43304	727 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	KIF11	P52732	1056 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	CACNA2D1	P54289	1103 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	NOMO3	P69849	1222 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	IFRD2	Q12894	506 aa	Predicted RBP	13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	SPA17	Q15506	151 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	SLC18A3	Q16572	532 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	PKDCC	Q504Y2	493 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	DENND5B	Q6ZUT9	1274 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	ERICH1	Q86X53	443 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	NUP93	Q8N1F7	819 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	GIPC2	Q8TF65	315 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	SLC35F5	Q8WV83	523 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	CPA5	Q8WXQ8	436 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	KCTD13	Q8WZ19	329 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	PPP1R13B	Q96KQ4	1090 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	HSFY1	Q96LI6	401 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	ZNF512	Q96ME7	567 aa	Predicted RBP	13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	CHP1	Q99653	195 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	SYT11	Q9BT88	431 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	FBXO44	Q9H4M3	255 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	PIDD1	Q9HB75	910 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	CYLD	Q9NQC7	956 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	STRIP2	Q9ULQ0	834 aa		13.2	□□□□□ -0.3
ABCD4-223	ENST00000555904	TMCO5B	A8MYB1	307 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	SART1	O43290	800 aa	Known RBP	13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	BEST1	O76090	585 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	CYP1A1	P04798	512 aa	Predicted RBP	13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	CALB1	P05937	261 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	GZMA	P12544	262 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	LCP1	P13796	627 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	HOXB8	P17481	243 aa	Predicted RBP	13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	FECH	P22830	423 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	GTF2F1	P35269	517 aa	Known RBP eCLIP	13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	GPR15	P49685	360 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	RGS7	P49802	495 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	SLC5A3	P53794	718 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	CENPC	Q03188	943 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	GFPT1	Q06210	699 aa	Predicted RBP	13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	ADIG	Q0VDE8	80 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	SKIV2L	Q15477	1246 aa	Known RBP	13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	PMF1	Q6P1K2	205 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	LRRC8A	Q8IWT6	810 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	GPR152	Q8TDT2	470 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	GOLGA1	Q92805	767 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	PSMG2	Q969U7	264 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	TRIM11	Q96F44	468 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	SLITRK1	Q96PX8	696 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	GCNA	Q96QF7	691 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	COMMD8	Q9NX08	183 aa		13.19	□□□□□ -0.3
ABCD4-223	ENST00000555904	CLDND1	Q9NY35	253 aa		13.19	□□□□□ -0.3

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