RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 FKBP3Q00688 224 aaKnown RBP13.24□□□□□ -0.29
SHMT2-214ENST00000554604 PRKCQQ04759 706 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 BIRC3Q13489 604 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 EDRF1Q3B7T1 1238 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 WDR72Q3MJ13 1102 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 VWA3BQ502W6 1294 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 FKBP15Q5T1M5 1219 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 GPR158Q5T848 1215 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 OSTM1Q86WC4 334 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 SPATA2LQ8IUW3 424 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-214ENST00000554604 YAF2Q8IY57 180 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 CCDC105Q8IYK2 499 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 PJA1Q8NG27 643 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 KIF18AQ8NI77 898 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 DEPDC1BQ8WUY9 529 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 CPLX3Q8WVH0 158 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 IRF7Q92985 503 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 FOXQ1Q9C009 403 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 SNX25Q9H3E2 840 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 KCTD10Q9H3F6 313 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 TRPV4Q9HBA0 871 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 ABCB6Q9NP58 842 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 ABHD10Q9NUJ1 306 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 FAM86C1Q9NVL1 165 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 CAPN11Q9UMQ6 739 aa13.24□□□□□ -0.29
SHMT2-214ENST00000554604 KIF26AQ9ULI4 1882 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-214ENST00000554604 ANAPC1Q9H1A4 1944 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 WDR87Q6ZQQ6 2873 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 VPS13AQ96RL7 3174 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 A0A1W2PQJ5 194 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 KANSL1LA0AUZ9 987 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 HEPACAM2A8MVW5 462 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 ZNF263O14978 683 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 CALUO43852 315 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-214ENST00000554604 CST3P01034 146 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-214ENST00000554604 PDGFRBP09619 1106 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 CSH1P0DML2 217 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 CSH2P0DML3 217 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 CYP2F1P24903 491 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 GDI1P31150 447 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 CASP4P49662 377 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 AP3M2P53677 418 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 MARSP56192 900 aaKnown RBP13.23□□□□□ -0.29
SHMT2-214ENST00000554604 UBXN2BQ14CS0 331 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 MAPRE1Q15691 268 aaKnown RBP13.23□□□□□ -0.29
SHMT2-214ENST00000554604 STXBP5Q5T5C0 1151 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 VITQ6UXI7 678 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 C4orf50Q6ZRC1 276 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 TPRG1Q6ZUI0 275 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 SLC9A9Q8IVB4 645 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 ARID3BQ8IVW6 561 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-214ENST00000554604 MFSD6LQ8IWD5 586 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 PARD3BQ8TEW8 1205 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 ZNF516Q92618 1163 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 DNASE1L2Q92874 299 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 SYT15Q9BQS2 421 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 TTYH3Q9C0H2 523 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 HEBP1Q9NRV9 189 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 DMAC2Q9NW81 257 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 NXF1Q9UBU9 619 aaKnown RBP13.23□□□□□ -0.29
SHMT2-214ENST00000554604 CDH9Q9ULB4 789 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 MAGED2Q9UNF1 606 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-214ENST00000554604 FRMD4BQ9Y2L6 1034 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 FAM186AA6NE01 2351 aa13.23□□□□□ -0.29
SHMT2-214ENST00000554604 COL4A3Q01955 1670 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 MYBPHLA2RUH7 354 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 PES1O00541 588 aaKnown RBP13.22□□□□□ -0.29
SHMT2-214ENST00000554604 HCRTO43612 131 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 ATP2C2O75185 946 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 CCDC175P0C221 793 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 CD72P21854 359 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 WARSP23381 471 aaKnown RBP13.22□□□□□ -0.29
SHMT2-214ENST00000554604 LMO2P25791 158 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 ATICP31939 592 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 KRT9P35527 623 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 GNL1P36915 607 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-214ENST00000554604 GPR15P49685 360 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 MYL6P60660 151 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 PSMC1P62191 440 aaKnown RBP13.22□□□□□ -0.29
SHMT2-214ENST00000554604 ETF1P62495 437 aaKnown RBP13.22□□□□□ -0.29
SHMT2-214ENST00000554604 CYP4F8P98187 520 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 SYCP1Q15431 976 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 DDR2Q16832 855 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 CFAP221Q4G0U5 840 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 SDHAF4Q5VUM1 108 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 RAD9BQ6WBX8 426 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 ZNF852Q6ZMS4 543 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 LIMS2Q7Z4I7 341 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 GPIHBP1Q8IV16 184 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 SCN4BQ8IWT1 228 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 OR8K1Q8NGG5 319 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 OR6B3Q8NGW1 331 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 KBTBD7Q8WVZ9 684 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 FUBP3Q96I24 572 aaKnown RBP eCLIP13.22□□□□□ -0.29
SHMT2-214ENST00000554604 NELL2Q99435 816 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 PHOX2BQ99453 314 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 DNAJC7Q99615 494 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 PKMYT1Q99640 499 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 NDST4Q9H3R1 872 aa13.22□□□□□ -0.29
SHMT2-214ENST00000554604 TASP1Q9H6P5 420 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms